Mycolicibacterium crocinum: MI149_23570
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Entry
MI149_23570 CDS
T08227
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mcro
Mycolicibacterium crocinum
Pathway
mcro03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mcro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MI149_23570 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mcro03400
]
MI149_23570 (mfd)
Enzymes [BR:
mcro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MI149_23570 (mfd)
DNA repair and recombination proteins [BR:
mcro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MI149_23570 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
UB2H
AAA_22
DUF3638
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ULN40599
LinkDB
All DBs
Position
complement(4846030..4849695)
Genome browser
AA seq
1221 aa
AA seq
DB search
MTAPGHQYVQTPIAGLVDLALTAPEFVALAQRAAERPDELALVGPASAQLYAACAVARKG
PLLVVTATGRDADDLTAELRGVFGESAAMFPSWETLPHERLSPGVDTVGARLMLLRRLAH
PDDERLGPPLCVVVTTVRSLLQPMAPDVGTVEPVTLTPGAEFDFDQLIERLVELAYTRVD
MVGKRGEFAVRGGILDLFPPTAEHPVRVEFWGDEVSEMRMFSVADQRSIPEIDVTAVVAV
PCRELLLTDEVRTHAAKLLADRPRGDGNQVTGSVGDMLAKLAEGIPVDGMEALQPVLRPD
DLTLLIDHLPDGCPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAIGGDAPIDVEELGG
SGFRELDEVHDAARKSGHPWWTVSQLAAEDATELDVRPAPSARGQQSNVDEIFAMLRAHV
LTGGFAAVVAPGTGTAHRVVEQLGERDTPAAMLEAGEAPKAGVVGVLKGPLHDGIIVPGA
NLVVITETDLTGNRVTATEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVERTV
GGARREYLVLEYASAKRGGGSDKLFVPMDSLDQLSRYVGGQEPSLSRLGGSDWTNTKTKA
RKAVREIASELVALYAKRQAAPGHAFGPDTPWQAEMEDAFGFTETMDQLTAIQEVKNDME
KPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTARMAGFP
VTVKGLSRFTDPAESRAVVEGMADGSVDIVIGTHRLLQTGVRWKDLGLVIVDEEQRFGVE
HKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGGHDDKQ
VAAALRRELLRDGQAFYIHNRVSSIDAAAARVRELVPEARVVVAHGQMPEELLERTVEGF
WNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYP
KEMPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGAEQSGHVAGVGFDLYVR
LVGEAVEAYRAAADGKTVTTAEEPKDVRIDLPVDANLPPDYIESDRLRLEAYRRLAAAAD
DAGIVGVVEELTDRYGPLPEPAQRLVAVARLRLVCRSYGVTEVAATGSGSPTTIRVSPLT
LPDSAQLRLKRVYPGASYRATTSTVTVPIPRSGSGVGAPRIRDLQLVQMVADLLRALDGQ
PQGELDITTFTPAGSAKGERR
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaccggggcaccagtatgttcagaccccgatcgcggggctggtggacttggcg
ctgaccgcgccggaattcgtcgctttggcgcagcgtgccgccgagcgtcccgacgaactc
gccctggtcgggcctgccagtgctcagctgtatgccgcctgcgcggtagcccgtaagggc
ccgctgctggtggtcaccgcgacgggccgcgacgccgacgatctcaccgccgagctgcgg
ggtgtgttcggcgagtcggcggcgatgttcccgtcctgggagaccctgccgcacgagcgg
ctctcgcccggggtggacaccgtcggcgcgcggctgatgctgctgcgtcggctggcgcac
cccgacgacgaacgcctgggcccgccgctgtgcgtggtggtcaccacggtccggtccctg
ctgcagccgatggctcccgatgtcggcaccgtcgaacccgtgacgctgacgcccggtgcg
gagttcgacttcgaccagctgatcgagcgcctcgtcgagctggcctacacccgcgtcgac
atggtcggtaagcgcggcgaattcgccgtccgcggcggcattttggaccttttcccgccg
acggccgagcaccccgtccgggtggagttctggggtgacgaggtcagtgagatgcggatg
ttctcggtggccgatcagcgctcgatccccgagatcgacgtgaccgccgtggtggcggtg
ccgtgccgtgagctgctgctcaccgatgaggtgcggacgcatgccgccaagctgctcgcc
gaccggccgcgcggcgacggcaatcaggtcaccggcagcgtcggcgacatgctggccaag
ctggccgagggcattcccgtcgacgggatggaagccctgcagccggtgctgcggcccgac
gacctgactctgctcatcgatcatctgcccgacggctgcccggtgttggtgtgcgatccg
gagaaggtgcgcacccgcgcggccgacctgatcaagaccgggcgggagttcctcgaggcc
tcgtggtcggtggccgccatcggcggcgacgccccgatcgacgtcgaagaactcggtggt
tccgggttccgcgagctcgacgaggtgcacgacgcggcccgcaagtccggccacccgtgg
tggacggtgagtcagttggcggccgaggacgccaccgaactcgacgtgcggcccgccccg
tctgcccggggccagcagagcaacgtcgacgagatcttcgcgatgctgcgcgcccacgtg
ctgaccggaggctttgctgccgtcgtcgcaccgggcaccggaaccgcgcaccgggtcgtc
gagcagctcggcgagcgcgacacccccgcggcgatgctcgaggccggcgaggccccgaag
gccggtgtggtcggcgtcctcaagggtccgctacacgacggcatcatcgtgccgggcgcc
aacctggtggtgatcaccgaaaccgacctgaccggcaaccgggtcaccgccaccgagggc
aagcggctggcggccaagcgccgcaacaccgttgacccgctggcgctcaccgcgggcgac
ctggtggtgcacgatcagcatggcatcggccggttcgtcgagatggtggaacgcactgtc
ggcggtgcgcggcgcgagtacctggtgctcgaatacgcctcggctaaacgcggtggcggg
tccgacaagttgttcgtgccgatggactccctcgatcagctgtcccggtacgtcggcggc
caggagcccagcctgagccgactcggcggcagcgactggaccaacacaaagaccaaggcg
cgcaaggcggttcgcgagatcgccagcgagcttgtggcgctctacgccaagcggcaggct
gcgccgggccacgccttcggcccggacaccccgtggcaggccgagatggaggacgcgttc
ggcttcaccgagaccatggatcagctgaccgccatccaggaggtcaagaacgacatggag
aagccggtcccgatggaccgggtgatctgtggtgacgtcggctacggcaagaccgagatc
gcggtgcgtgcggcattcaaggcggtgcaggacggcaagcaggtcgcggtgctggtgccc
accacgctgttggccgaccagcatctgcagacgttcaccgcgcggatggccgggttcccg
gtgaccgtgaaaggcctgtcgcgctttaccgatcccgccgagtcgcgggcagtggtcgag
gggatggccgacggcagcgtcgacatcgtgatcggcacgcaccggctgctgcagaccggt
gtgcgatggaaagacctcggcctggtgatcgtcgacgaggagcagcgtttcggcgtcgag
cacaaggagcacatcaagagcctgcgcactcacgtcgacgtgctgaccatgagcgcgacc
ccgattccgcgcacgctggagatgagcctggccggcatccgggagatgtcgaccatcctc
accccgcccgaggagcggtatccggtgctgacctatgtcggcggccacgacgacaagcag
gtcgcggcggcgttgcgtcgcgaactgctgcgcgacgggcaggcgttctacatccacaac
cgggtcagcagcatcgacgccgcggctgcgcgggtgcgggaattggtgcccgaggctcgg
gtcgtggtggcgcacggccagatgcccgaagagttgttggagcgcaccgtcgaaggattc
tggaaccgggagtacgacatcctggtctgcaccacgatcgtcgagaccgggctggacatc
tcgaacgccaacaccctgatcgtcgagcgtgctgacaccttcggcctgtcgcagttgcac
cagctgcgcggccgcgtgggccgtagccgcgagcgcggctacgcctacttcctgtacccc
aaggagatgccgctcaccgagactgcctacgaccggctggccaccatcgcgcagaacaac
gagctcggtgccggcatggcagttgcgttgaaggacttggagattcgcggtgccggaaac
gtgctgggcgccgagcagtccgggcacgtcgccggtgtcggattcgatctgtacgtccgg
ctggtcggggaggccgtcgaggcgtaccgagccgcggccgacggtaagacggtgaccacc
gccgaggaacccaaggatgtgcgcatcgacctgccggtcgacgccaatctgccgccggac
tacatcgaaagcgatcggttgcgtctggaggcctaccgtcggctggcggcggccgccgac
gatgccggcatcgtcggcgtggtggaggagctgacggaccgctacgggccgctgcccgag
cccgcgcagcgcctggtcgcggtggcgcggctgcggctggtgtgccgcagctacggagtg
acggaggtggcggccaccggaagtggctctcccacaacgattcgcgtctcaccgctgacg
ctgccggactccgcgcagctgcggctgaagcgggtttatcccggtgcgagctaccgcgcg
acgacatcgacggtgacggtgccgattccgcggtccggcagcggtgtcggcgccccgcgg
atccgcgacctgcaattggtgcagatggtggccgatctgctccgcgcacttgacggacaa
ccgcagggcgagcttgatataaccacgttcacaccggccggatcggcgaagggagagcgg
cggtga
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