Mycolicibacterium crocinum: MI149_28380
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Entry
MI149_28380 CDS
T08227
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mcro
Mycolicibacterium crocinum
Brite
KEGG Orthology (KO) [BR:
mcro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcro03019
]
MI149_28380 (hrpA)
Enzymes [BR:
mcro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MI149_28380 (hrpA)
Messenger RNA biogenesis [BR:
mcro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
MI149_28380 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
NACHT
nSTAND3
T2SSE
ABC_tran
PhoH
TsaE
AAA_23
Motif
Other DBs
NCBI-ProteinID:
ULN41442
LinkDB
All DBs
Position
complement(5789911..5793849)
Genome browser
AA seq
1312 aa
AA seq
DB search
MSEVSVEQVRQLRNRLDGLTFRDAARLGRRLKSLRGEVSAATVQKIADQVAAAEAVIATR
EAAVPVITYPDLPVSHRRDEIAKAITDNQVVVVAGETGSGKTTQLPKICLELGRGIRGTI
GHTQPRRLAARTVAQRIADEVGTPLGETIGYTVRFTDQASDRTLVKLMTDGILLAEIQRD
RRLLRYDTLILDEAHERSLNIDFLLGYLRELLPRRPDLKVIVTSATIEPQRFAAHFNDAP
IVEVSGRTYPVEIRYRPLEVPVVDDDSEAGGRRRGGSEDPDDPDHEIVRTEVRDQTEAIV
DAVRELEAEPPGDVLVFLSGEREIRDTAEALRDLKNTEVLPLYARLPTAEQQRVFQPSRT
GRRIVLATNVAETSLTVPGIRYVVDPGTARISRYSRRTKVQRLPIEPISQASAAQRAGRS
GRTAPGVCIRLYSEEDFAGRPRYTDPEILRTNLAAVILQMAALQLGDIESFPFLDPPEQR
SIRDGVQLLQELGAFDASGAITDIGRRLAQLPVDPRLARMIVQADTEGCVREVLVLAAAL
SIPDPRERPSDHEEAARQKHARFADEHSDFVSFLNLWRYLREERKARSGNAFRRMCREEF
LHYLRIREWQDLTGQLRSIARDIGIRESDDPEPADPARVHAALVAGLLSHIGLREGDSRE
YTGARNSRFVLAPGSVLTKRPPRWLVVADLVETSRLYGRIAARVEPEMVERVAGHLVQRS
YSEPHWDAKRGAVMAFERVTLYGLPLVPRRRVGYATVDPTASRELFIRHALVQGEWQTRH
HFFADNARLRAELAELEERARRRDLLVDDDEIYAWYNSRIPPQVVSARHFDGWWKKQRHK
TPDLLTFTRDDLLRVDDAAERPDNWQAGDLSLPLTYRFEPGAADDGVTVHIPVEVLARLG
GDEFGWQVPALREELVTALIKSLPKDLRRNFVPAPDTARAVLADIQVGREPLLEALQREL
HRRSGILVPITAFDLDKLPAHLRVTFAVEGPDGAEVARGKDLDVLQRQLAGSARKAVADA
VASDLERKGLRAWPDDLDRLPAGVERTVGGHLVRGYPALVDAGTGVDVRVFATEAERDAA
MRAGTRRLLRLAVPSPVKSVEKSLDPRTRLVLGANPDGSLAALLDDCADAAVDVLAAQPV
WTKADFAALRDRVASALPSTTREIVSRVQKVLAAVHEVQLALPDKPPAAQADAVADIRAQ
LAGLVATPFVTSTGAGRLADLTRYLTAISRRLDRLSQAPQADRERMQRVHAVEDAYSELL
HALSPTRAAASDVRDIGWQIEEFRVSLWAQQLGTPRPVSEQRIYRAIDAVLA
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgaggtctccgtcgagcaggtgcgccagctgcgcaaccgcctcgacgggctgacc
ttccgcgacgcggcccggctgggccggcggttgaaatccctgcgcggcgaggtgtccgcg
gcgaccgtgcagaagatcgccgaccaggttgcggcggccgaggccgtgatcgccacccgg
gaagccgcggtgccggtcatcacctaccccgatctgccggtcagtcaccgccgcgacgag
atcgccaaagccatcaccgacaaccaggtcgtggtggtcgccggcgagaccggctcgggc
aagaccacccagctgcccaagatctgcctcgagctgggccgcgggatccgcggaaccatc
ggccacacccaaccgcgcaggctggcggcgcgcacggtggctcagcgcatcgccgacgag
gtgggcaccccgctgggcgaaacaatcggctacaccgtccgcttcaccgaccaggccagc
gaccgcaccctggtgaagctgatgaccgacggcatcctgctcgctgagatccagcgcgac
cggcgcctgctgcgctacgacaccctgatcctcgacgaggcgcacgaacgcagcctcaac
atcgacttcctcctgggctatctgcgtgaactgctgccccggaggccggatctcaaggtg
atcgtcacctcggccaccatcgagccgcaacggttcgccgcgcacttcaacgacgctccg
atcgtcgaggtgtccggacgcacctacccggtggagatccgctatcgacccctggaagta
cctgtggtggacgatgattcggaagccggaggtcgccgccggggcggctccgaagaccca
gacgatcccgaccacgagatcgtccgcaccgaggtccgcgaccagaccgaagccatcgtt
gacgccgtccgcgagttggaggccgagccgcccggcgatgtattggtgttcctgtccggt
gaacgagaaatccgggacacggctgaggccctgcgggacctgaagaacaccgaggtgctt
ccgctgtatgcgcggctgccgacggccgagcagcagcgggtgttccagccatcgcggacc
ggtcgacgaatcgtgttggccaccaatgtcgccgagacgtcactgaccgtgccgggcatc
cgctacgtcgttgatccggggaccgcgcggatatcccgctacagcaggcgcaccaaggtg
cagcggctgccgatcgagccgatctcgcaggcctcggccgcgcagcgggccggccgctcc
gggcgtaccgcacccggggtgtgcatccggttgtactccgaggaggacttcgcgggtcgt
ccccgctacaccgatccggagattctgcgcaccaacctggcggcggtgatcctccaaatg
gcggcgctgcaactcggcgacatcgagagctttccgtttctcgacccgcccgagcagcgc
agcatccgcgacggtgttcaactgctgcaggaactcggcgcctttgacgcgagcggggcc
atcaccgatatcggccgccggctcgcgcagttgccggtggatccgcggctggcgcgcatg
atcgtgcaggccgacaccgaaggctgcgtgcgcgaggtgctggtgctcgccgccgcgctg
tcgatacctgaccctcgtgagcgaccgtcggaccatgaagaagcggcgcggcagaagcat
gcgcggttcgccgacgagcattcggacttcgtatcgttcctgaacctgtggcggtacctc
cgggaagagcgaaaagcccgttccggcaacgcgttccggcgcatgtgccgcgaggagttt
ctgcactacctacgcatccgggagtggcaggacctgaccggacagctgcgcagcatcgcc
cgcgatatcggtatccgggaatccgacgacccagagccggccgatccggcacgtgtgcac
gcggccctggttgccggcctgctctcgcatatcggtctgcgggagggggattcgcgcgag
tacaccggtgcgcgcaactcccgattcgtgttggctcccgggtcggtgctgaccaaacgg
ccgccacgctggctggtggtcgccgacctcgtggagaccagccgcctctacggccgcatc
gccgcccgcgtcgaacccgagatggtcgagcgggtggccggacatttggtgcagcgcagc
tacagcgagccgcactgggacgctaaacgcggtgccgtgatggccttcgaacgggtgacg
ctctacggacttccgctcgtaccgcgccgacgggtgggctatgccaccgtcgacccgacc
gcgtcccgcgagctgttcatcaggcatgcgctggttcagggggagtggcagacccgccac
cacttcttcgccgacaacgcgcggctgcgggcggaactggccgagctggaggagcgcgcc
cgccggcgcgacctgctggtcgacgacgacgagatctacgcctggtacaacagcaggatt
ccgccgcaggtggtgtccgcccgtcatttcgacggctggtggaagaagcagcggcacaaa
acccccgacctgctgaccttcacgcgcgacgacctgctccgcgtcgatgacgccgccgaa
cggccggacaactggcaggccggcgacctgtcgctaccgctgacctaccggttcgagccc
ggcgccgccgacgacggggtgacggtacacattccggtcgaagtgctggcccggctcggc
ggcgacgaattcggctggcaggtaccggcattgcgcgaggaactggtgaccgcgctgatc
aagtccttgcccaaagacctgcggcgcaatttcgttcctgctcctgacaccgcacgggcg
gtactcgccgacatccaggttggccgcgaaccgctactggaagcgctgcagcgtgaatta
caccgccgcagtgggattctggtgccaatcaccgccttcgatctggacaaactgcccgcg
cacctgcgggtgaccttcgccgtcgagggaccggacggagccgaggtggcccgtgggaag
gacctcgatgtgctgcagcgtcagctcgccgggtccgcccgcaaggcggtggccgacgcg
gtggccagcgatctggaacgaaaagggctgcgcgcctggcccgacgacctcgaccggtta
ccggccggcgtcgagcgaaccgtgggcggtcacctcgtgcgtggctacccggcattggtc
gatgccggcactggcgtggatgtacgggtcttcgccaccgaggccgaacgggacgccgcg
atgcgagcgggcacaaggcggctgctgcgtctggcggtgccgtcgccggtgaaatcggtg
gagaagagcctggatccgcgaacccgactggtattgggagccaaccccgacggctcgttg
gccgcgcttctggacgattgcgccgatgcggccgtcgatgtgctggccgcgcaaccggtc
tggaccaaggccgatttcgctgcgctgcgagaccgggtggcctcggcgctgccgtcgacg
acccgcgaaatcgtgagccgggtacagaaggttctcgccgccgtgcacgaggtgcagctc
gccctgcccgacaagccgcctgcggcgcaggccgatgcggtcgccgacattcgcgcgcag
ctggcgggactggtcgcgacaccgttcgtcacctccaccggggccgggcggctggccgac
ctgacccgctacctgacggcgatcagccgacgcctggaccggctgtcccaggccccgcag
gccgaccgcgagcgcatgcaacgggtgcacgccgtcgaggacgcctactccgaactgctg
cacgcactttcgcccacccgcgcggcggcctccgatgtgcgcgacatcgggtggcagatc
gaagagtttcgtgtcagcctgtgggctcagcagctgggcaccccacgcccggtcagcgag
caacgcatctaccgcgcgatcgacgcggtcctggcctga
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