Moraxella catarrhalis BBH18: MCR_0976
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Entry
MCR_0976 CDS
T01224
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mct
Moraxella catarrhalis BBH18
Brite
KEGG Orthology (KO) [BR:
mct00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mct03019
]
MCR_0976 (hrpA)
Enzymes [BR:
mct01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MCR_0976 (hrpA)
Messenger RNA biogenesis [BR:
mct03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
MCR_0976 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_22
nSTAND3
AAA_19
HA2_N
T2SSE
PhoH
NACHT
AAA_30
SRP54
AAA_16
ABC_tran
TsaE
AAA_23
Motif
Other DBs
NCBI-ProteinID:
ADG61241
LinkDB
All DBs
Position
complement(976597..980769)
Genome browser
AA seq
1390 aa
AA seq
DB search
MHSTDNLPVLAKDRHYLNKLKQKMNSTTGDLKTKCKIRYDAIYERSAEQVANRMDSIPKN
LSEKLNHDLPVTAEADTLIQAIRDHQVVIIAGETGSGKTTQLPKLAMMAGRGITGQIGHT
QPRRLAARSVAMRIAEELGEPLGQTVSFKIRFTEEGGKHSIVKLMTDGILLAELGSDKFL
ANYDTIIIDEAHERSLNIDFIMGYLKRLLPKRPDLKVIITSATLDTQRFSDYFAANGKPA
PVYIVEGRSYPVEVRYHPLTDTIVSSQDDDAFDDIEDNLPRALTAAVNECFEDARTKGHP
DQADILIFAATEAEIRELQEVLMLYAPAHTEILPLFARQSYGEQQKIFAPSGKGRRIIIA
TNVAETALTVPNIRYVIDLGFARISRYNYRSRIQRLPIEAISQAAANQRKGRCGRVAPGV
CIRLYSEEDFNSRPEFTEPEILRTNLASVILQMERLQLGDVNAFDFITPPDLRLVNDGRK
LLIELGALDDKSFTKTRTKKGRTQLSSLTKIGQQMAKMPIDPRLARMLVAGDAFDCLADI
LIIVSALAVQDVRERPINKHAQADQKHALFRKEDSDFLFYLELFAALFDQHSTNDNQALS
SNARRNFAKKHYLSYARIREWQKTHRQLSEMMAEMGFEINKQKNHQNDVKIDTKKGVRLS
LKSGTSHQKSIKQALVGAKALKNDIDNKTSIHYANIHRALLSALLSFVAHKTDTVGEYLM
ARSQKARIFPASTLHKKGAQWVMAFEVVETSQVYMRTLAKIEPEWIIKAAPNLLKYHYFE
PHWSKKAGRVRAYAQISLFGLIVIAKELVNFEQIDLVQAREIFIRDALVANQYGMQMKFL
ADNANKIKDIERIEDKLRRRDLLVDEESLYQFYDAKIPNHIASRKSFEEFYYDAENKTPN
FLHFSDEDVLNEAVDDSREFPESWHLGGVRLPLSYVFDPAADNDGVTVHVPIKALAQVDP
VALLWGISGWRYELVLQLLKTLPKEIRRQIVPIPDTCQKIFHQLDASSKMGLLDQLVAAL
KTLGVQAHAQDFAPDKVEDYLRPLICVVDDKNRVIEKSRDLPKLQARHRKTSVQSIAIEQ
GVHHHFPNHFNFVKNKHTSGIVMQEFSALKADAAQSAVFIATFTEINAALAEHKKGVLTL
IKGHLGAKQKQLTGQIDKAFKLAFAPLGDLEKLKNIVVHATLEACLYDYGPDFDHKPVSQ
HVDHARAAIAGLITQNNQWLISHLPLDEREFDDCQDLILKNFLLVGQEILRNLKEIYTAW
QTARGKLLMLDQEIFGENIEDIEDQLDDLQLANFVYQTDYQHWRQYPRYLQALNIRLDRL
QHNLEADLDAVYLLDTHMERLARCVKNPKFAEYRWLVEEYRINLFAQPMKTVQPVSAKRL
ETLWANLTTQ
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atgcattctaccgataatttaccagtccttgccaaagacagacattatttaaataaacta
aaacagaaaatgaattctaccacaggcgatctaaaaactaagtgcaaaatacgctatgat
gctatctatgagcgatctgccgaacaggtcgccaatcgtatggatagcataccaaaaaat
ctatcagaaaaacttaatcatgatttgcccgtgactgctgaagccgatacgctaattcaa
gcgatccgtgatcatcaagtggtgattatcgcaggtgagacgggttctggcaaaaccacg
caactgcctaagcttgctatgatggcagggcgtggcatcacaggtcaaattggccacaca
cagccacgccgattggctgcacgctcggtagcgatgcgtatcgctgaagagcttggcgag
ccacttggtcagacggtgagttttaagattcgcttcaccgaagaaggtggcaagcactct
attgtcaagctgatgacagatgggattttacttgctgaattaggctctgataagtttttg
gcaaattatgataccatcatcattgatgaagcacatgagcgtagcttaaatattgatttt
atcatgggctatttaaagcgtcttttacccaaacgccctgatctaaaagttatcatcacc
tccgccactttagacacccaaaggttttctgactattttgcagcgaatggcaaacctgca
cctgtgtatattgtcgagggtcgtagctatcctgttgaggtgcgctatcaccccttgacc
gataccatcgtatctagccaagatgatgatgcatttgatgatattgaggacaatctgcca
cgcgctttgacagcagcggttaatgaatgctttgaagatgcacgcaccaaggggcatcca
gatcaggcagatatcttaatttttgcggcaacagaagctgaaatccgtgagctacaagaa
gtgctgatgttatatgcgcctgcccatacagagattttgccgttatttgcacgccaaagc
tatggtgagcagcaaaaaatctttgcaccgtcaggtaaagggcgacgtatcatcatcgcc
acaaatgtcgcagaaactgcgttgacagtgcctaatattcgctatgtgattgatttgggt
tttgccagaatttctcgctataactatcgatcacgcatccaaagactgcccatcgaggca
atcagtcaagccgccgccaatcaaagaaaagggcggtgcggtagggtagcacctggggtg
tgtattcggttgtattctgaagaagattttaacagtcgtccagaatttaccgaacctgaa
atcctacgcaccaatttagcatcagtgattttacagatggagcgtcttcaacttggcgat
gtgaatgcctttgactttatcacaccgcctgacttacgattggtgaatgatggccgtaag
cttttgatagaattgggagcacttgatgataaaagttttaccaaaacacgcaccaaaaaa
ggacgcacacagcttagcagtctaaccaaaatcggacaacaaatggcaaaaatgcccatc
gatccacgcttggctcgcatgcttgtggcaggtgatgcctttgattgtttggcggatatt
ttaatcatcgtgtcagcgctggcggttcaagatgtgcgtgaacgcccaatcaataagcac
gctcaagccgatcaaaagcatgcgttatttcgtaaagaagattcagattttttattttat
ttagaattgtttgcagcactgtttgatcagcattcaaccaatgacaatcaagcacttagc
agtaatgctcgccgcaattttgccaaaaaacattatctaagctacgcacgcatccgtgaa
tggcaaaaaactcacaggcagcttagtgagatgatggcagagatgggttttgagattaat
aaacaaaaaaatcaccaaaatgatgtgaaaattgataccaaaaagggtgttcgattatca
cttaagtctggtacctctcatcaaaaatccatcaaacaagcactcgtgggggctaaagcc
ctaaaaaatgacattgataacaaaacaagcattcattatgccaatattcatcgtgcactt
ttgagtgcacttttgtcatttgtggcgcataaaaccgatacggtgggcgaatatttgatg
gctcgtagccaaaaagcccgtatttttcctgccagtacgcttcataaaaagggtgctcag
tgggtcatggcgtttgaggtggtggaaacttcgcaagtttatatgcgtacgcttgctaag
attgaacctgaatggattatcaaagcagcaccgaatttattaaaatatcattattttgaa
ccgcattggtcaaaaaaagcagggcgtgtgcgtgcttatgctcaaatcagtttatttgga
ctgattgtgattgccaaagaattggtgaattttgaacaaattgatttggtacaggccaga
gagatttttattcgtgatgctttggttgccaatcaatatgggatgcagatgaaatttttg
gcagataatgccaataaaatcaaagacattgagcgtattgaagataagcttagacgccga
gatttattggttgatgaagaaagtttatatcaattttatgatgccaaaattcctaatcat
atcgccagccgtaaaagttttgaagaattttattacgatgctgaaaacaaaacacccaac
tttttgcattttagtgatgaagatgtgcttaatgaagctgttgatgatagtcgagaattt
cctgaaagttggcatttgggcggtgtacgcttgccgctgtcgtatgtctttgatccagcg
gctgataatgatggcgtgaccgtgcatgtaccgattaaggcattggcacaggttgatcct
gtggcactgctttggggtatctcagggtggcgttatgaattagtactacaattattaaaa
acattgcctaaagaaattcgccgacagattgtccccattccagatacttgccaaaagatt
tttcaccaattggacgcaagctcaaagatgggtttattagatcagcttgtggcagcatta
aagacgcttggtgtgcaagcacacgctcaagattttgcacctgataaggttgaagattac
ctgcgtccattgatttgtgtggtggatgataaaaatcgtgtgatcgaaaaaagtcgtgac
ttgccaaaattacaggcacgacatcgtaaaaccagcgttcaaagcatcgctattgagcag
ggagtgcatcatcattttccaaatcattttaattttgtcaaaaataagcacacatcgggc
attgtcatgcaagagttttctgcactaaaagcagatgcggcccaaagtgcggtttttatt
gcgacttttacagagattaacgctgctttggctgagcataaaaagggcgttttaacgctc
attaaggggcatttgggtgcgaaacaaaaacagctgactggtcaaattgataaagcattt
aaattggcgtttgcaccattaggtgatttagaaaaactaaaaaatatcgttgtacatgca
actttagaagcctgcctttatgactacggtccagactttgatcataagcctgtcagtcaa
cacgttgatcatgccagagcagcaattgcaggtctaataacacaaaataatcaatggctg
atttcacatttgccactagatgaacgagagtttgacgattgtcaagacttaattttgaag
aattttttactggtaggtcaagaaatcttaagaaacttaaaagaaatttataccgcttgg
caaacagctcgtggcaagcttttgatgctagatcaggagattttcggtgaaaatatcgaa
gacatcgaagatcagcttgatgacttgcaattggcaaattttgtatatcagacggattat
cagcattggcgtcagtatcctcgttatttacaggcactcaatattcgccttgataggcta
cagcataatttagaggcggacttggatgctgtatatttgctagatacgcacatggaacgc
ttagcaaggtgcgttaaaaatcctaagtttgcagaatatcgctggctggtcgaagaatac
cgtattaatttatttgctcaaccgatgaaaacagttcagccggtttctgccaagcgtctt
gaaacactgtgggcaaatctgaccactcaataa
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