Moraxella catarrhalis BBH18: MCR_0982
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Entry
MCR_0982 CDS
T01224
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mct
Moraxella catarrhalis BBH18
Pathway
mct03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mct00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MCR_0982 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mct03400
]
MCR_0982 (mfd)
Enzymes [BR:
mct01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MCR_0982 (mfd)
DNA repair and recombination proteins [BR:
mct03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MCR_0982 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
MFD_D3
ResIII
ERCC3_RAD25_C
Cas3-like_C_2
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ADG61247
LinkDB
All DBs
Position
complement(984565..988119)
Genome browser
AA seq
1184 aa
AA seq
DB search
MIDTFKPKLDLPTKANFKTTLPLLGGADLSFWLALAAKSEERLIVMIANHQNELNQLDTE
LSFFGIDAHVFPDWEILAYDQLSVHQDIISERIALLTRMPTTGVLLVSTQTLMQRIAPPS
WLIGQHFDLAVGDKFDIHEQRLRLTKAGYVQTENVFEPGEFAVRGSIVDIFAVGQSLPFR
LDLFDDNIETIKFFDPDSQRTLSDNDLAQLKKDAQAGMNTHHAQKLPSSAKITEFRLLPA
REFPLEEGKEMFRQNFASLFPNASARKIEFYNDVMAAIAPQGIEFYAPLFFELDAWMKTG
NLFSYLPDDTLVVSHDNLSACHDEYYQQIQARHHSRAHDKSLPIMPPDYLFLANNEFHQV
LKAYPRVVINTNHDTAKIGAMESLPPPILPINHQAAKPLSELLSFIKSGQVPILLVAESA
GRREIILELLKDKVAVKVVDNYQEFINNLDDFNTDCIALSVAPIECGLWLRDETGGLCII
SETQIFGRQVLQTRRRRQSSISQAFLIKSVTELTEGALVVHLEHGIGRYQGLVVLDVGEG
EQEFIHLKYADDASIYVPITNLALIGRYSGSDLQTVSLSKIGSGKWEKAKLKALEQIHDV
AAELLNVQARRNAKSGISFDIDMSQYELFASQFAFEETIDQAEAIHAVMHDMKQSKPMDR
LICGDVGFGKTEVAMRAAFIAVQAGYQVAVLVPTTLLAGQHEDSFLNRFADWPIKIESLS
RFGNKKHQDAILAGLADGTVDIVIGTHKLIQDDVKFKQLGLMIIDEEHRFGVRHKERIKA
LQTNIDSLSMTATPIPRTLNMALSGMQDISIIATPPARRLAIKTFLLPKSDETIKEAILR
EILRGGQVYYLHNDVASIEAAADTLRELVGEARVAVAHGQMNERELSVVMNDFYHKKFNV
LVASTIIETGIDVPNANTIIIHRADKFGIAQLHQLRGRVGRSHHQAYCYLMVPSLKGLSS
DAKKRLNAITRANTLGAGFMLASEDLEIRGAGEILGKEQSGNMQTIGFGLYMDMLERATN
AIKQGKTPSLATPLDLVSDIDIHASALIPDEYLGDVHERLVFYKRISSLDDVNQLIDIRT
EMIDRFGTLPTQTQNLFAVHRIRIRAKALGITKIDATQTTISIEFRADTPIDGLAIIKLI
QSNDGYRMNGATAIRYTSQELMDTQARIDKVNELLLYFESTKTA
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atgattgatacatttaagcccaaattagatttgccaaccaaggcaaattttaagacaact
ttacccttacttggcggtgctgatttgagtttttggcttgcactggcagccaaaagtgaa
gagcggctgattgtgatgatcgccaatcatcaaaatgaactgaatcagttggatactgag
ctgtctttttttggcattgatgcacatgtttttccagattgggagattttggcttatgat
cagctgtctgttcatcaagacattatctcagagcgtattgctttactaacgagaatgcca
acaactggtgtcttattggtcagtactcagacattgatgcaacgtatcgcaccaccaagc
tggctgataggacagcattttgatttggctgtcggtgataaatttgatattcatgaacag
cgacttcgattaaccaaagcaggctatgtgcagacggagaatgtgtttgagccaggagaa
tttgcggttcgaggcagtattgttgatatttttgccgttggtcaaagcctaccttttcgt
cttgatttgtttgatgataacattgagacgatcaaattttttgatcctgacagtcagcgt
actttatccgataatgatttagctcagctaaaaaaagatgcccaagcaggcatgaatacg
catcatgcccaaaagctgccatcatctgccaaaatcaccgaatttcgcctgctgcctgct
agagaatttcccttggaagaaggcaaagagatgtttcgccaaaattttgcgagcctgttt
cctaatgccagcgcccgcaagatagaattttataatgatgtcatggcagccattgcccct
cagggaattgagttttatgcaccgttattttttgagcttgacgcatggatgaaaacaggc
aatttatttagctatttgcccgatgatacactggtggttagtcatgataatcttagtgct
tgtcatgatgagtattatcagcaaatccaagcacgccatcattctcgtgcacatgataaa
tcattgccgattatgccgcctgattatttatttttggcgaataatgaatttcatcaagta
ttgaaagcctatcccagagttgttatcaacacaaaccacgatacggcaaaaattggtgcc
atggagagtttaccgccgccgattttgccgattaatcatcaagctgccaagcctttatca
gaactgctatcattcataaaatcagggcaagtaccgattttattggtcgctgaaagtgct
ggtcgccgtgaaattattcttgagctattaaaagataaagtcgctgtcaaagtggttgat
aattatcaagaatttattaataatttagatgattttaatactgattgtattgctttgagt
gttgcaccgattgagtgtggtctttggttgcgtgatgaaactggcggattatgcatcatc
tcagagacacaaatttttggtaggcaggtgcttcaaacacgccgtcgtcgtcaatcaagt
atttcacaggcttttttgattaagtcggtaactgagttgaccgaaggggcgttggtggtt
catcttgaacatggcatcgggcgttatcaaggtttggtggtgctggatgtgggtgaaggt
gagcaagaatttattcatctaaaatatgccgatgatgccagtatttatgtacctattacc
aatttggcactgattgggcgatatagcggctcagatttgcagacagtcagcctgtctaaa
attggttcgggcaaatgggaaaaagccaagctaaaagctttggaacaaatccatgatgtt
gccgccgagcttttaaatgtacaggctcgtagaaatgctaaatcaggcatcagttttgat
attgatatgtctcaatatgagctatttgccagccaatttgcttttgaagaaaccatcgac
caagctgaagctatccatgcagtgatgcacgatatgaagcaaagtaaaccgatggatagg
cttatctgtggtgatgttggttttggcaagaccgaagtggcgatgcgtgcggcattcatt
gctgttcaggcgggctatcaagttgccgtacttgttccaacgacgcttttggcagggcag
cacgaggacagctttttaaatcgctttgctgattggcccattaagattgaaagtttatca
cgatttggcaataaaaaacatcaagatgccattttagcagggctggcagatggtacggtg
gatattgtgattggtacgcataagctcattcaggacgatgttaaattcaaacagcttggt
ttgatgattattgatgaggaacatcgttttggcgtacggcataaagagcgtattaaagca
ctacaaaccaatattgacagtttatcaatgactgccaccccgattccacgcaccttaaat
atggcgttatcgggcatgcaggatatttctatcattgccacaccacctgccagacgcttg
gcgattaagacttttttattacccaaatctgatgagacaatcaaagaagcaattttacgg
gagatactcaggggcggacaggtatattatctacataatgatgttgctagtatcgaggca
gcagctgacacactgcgtgaattggtcggtgaagcacgagtagcggtagcacatgggcag
atgaatgagcgtgagctttcggtggtgatgaatgatttttatcataaaaagtttaatgtt
ttggttgctagcaccatcatcgagacaggtatcgatgtgcctaatgccaataccatcatt
attcaccgagcggataaatttggtatcgctcagttgcaccagttgcgtggtcgtgtgggt
cgtagccatcatcaagcatactgctatctgatggtgccatcattgaaaggattatcaagc
gatgccaaaaaacgcctaaatgccatcaccagagccaacactttgggtgcagggtttatg
cttgccagtgaagatttggaaattcgtggtgctggggaaattttaggcaaagagcaatct
ggtaacatgcaaaccattggttttggcttatatatggatatgcttgagcgtgcgaccaat
gccatcaaacaaggcaagacaccgagtcttgccacaccactggatttggttagtgatatt
gatattcatgcatcggcactgatacctgatgagtatttgggtgatgtgcatgagcgtttg
gtattttataaaagaatcagtagcttagatgatgtcaatcagctcatagacattcgtact
gagatgattgacagatttggcacattacccacccaaacccaaaatttatttgcggtgcat
cgcattcgcatacgagccaaagccttagggattactaagattgatgcaacccaaaccacc
atcagtattgagtttcgtgccgatacgccgattgatggattggcgattattaagctgatt
cagtccaatgacggttatcgcatgaatggtgcaacggccatccgatacaccagccaagag
cttatggatacccaagctagaattgacaaggtaaatgagctgttactatattttgaatct
accaaaactgcctaa
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