Methanobacterium congolense: MCBB_0450
Help
Entry
MCBB_0450 CDS
T04503
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mcub
Methanobacterium congolense
Pathway
mcub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MCBB_0450 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcub03019
]
MCBB_0450 (cshA)
03009 Ribosome biogenesis [BR:
mcub03009
]
MCBB_0450 (cshA)
Enzymes [BR:
mcub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MCBB_0450 (cshA)
Messenger RNA biogenesis [BR:
mcub03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MCBB_0450 (cshA)
Ribosome biogenesis [BR:
mcub03009
]
Prokaryotic type
rRNA helicases
MCBB_0450 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
SCG85027
UniProt:
A0A1D3L078
LinkDB
All DBs
Position
I:464229..465809
Genome browser
AA seq
526 aa
AA seq
DB search
MKKLKFRDLDISVELERAVADMGFEEATPIQSLAIPHVLSGRDVIGQAQTGTGKTAAFGI
PILENVDPSNKDLQAVILCPTRELAIQVAEELRKLSKYMKKIKVLPIYGGQPIERQINAL
KKGVQIIIGTPGRVMDHMGRRTLDMSSVKMMVLDEADEMLDMGFREDIEFVLSEMPEERQ
TLLFSATMSRDILNLTRRYLEDPEFLKVVHQELTVPEIQQIYFEVKEKMKLELLSRLLDI
HNFQLSLVFCNTKRRVDKLVTHLQIRGYAADGLHGDMTQNQRDRVMSKFRNGKVEVLVAT
DVAARGIDVENVEAVFNYDVPNDDEYYVHRIGRTGRAGKKGMAFTFVSGKEIYQLRDIQK
YTKTKIEQHQIPSVKDVEAIKTNKFLEKVKHVMNTEDLEKQVRIVEKMMEEDYSSVEMAA
ALLKIVMTREGSDSAAEEFGDTGAEPGMVRFFMNAGRKQRVKAKDIVKAIAEHTGLSSSN
IGKIDIFDKFSFVEVPEASASDVFSLMNGARIKGKSINIEPANKRE
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaacttaaatttagagatttagacatatccgttgaattagagcgggctgtcgca
gatatgggctttgaagaagccacaccaatccagtcacttgccatacctcatgtgctcagt
ggtagagatgttataggccaggcacaaacaggtaccggaaaaacagctgcatttggaatt
ccaattcttgaaaatgttgatccaagcaacaaggatctgcaggctgttattttatgtcca
acaagggaactcgcaatccaggtagcagaggaactcagaaaactatcaaagtacatgaag
aagatcaaggtactgccaatatacggtggccagccaatagagagacagatcaacgccctt
aaaaaaggggtgcagatcataataggaacacctggacgtgtgatggatcacatgggaagg
agaaccctcgacatgagcagcgttaaaatgatggtccttgatgaagctgacgaaatgctt
gacatgggtttcagggaagacatagaattcgttttaagtgaaatgcccgaagaaagacag
acgttactattctcagcaaccatgtcccgtgacatcctcaacctgactcgcaggtacctc
gaagaccctgaattccttaaagtggttcatcaagaactgaccgtgcctgagatccagcag
atatacttcgaagtcaaggagaaaatgaagctcgagcttctttcacgccttctggatata
cacaacttccagttatcactggttttctgtaacaccaaaagaagagtcgacaaactcgtt
acacacctccagataaggggatacgctgcagacggtcttcacggtgacatgacccagaac
cagagggacagggtaatgtccaaattcagaaacggaaaggtggaagttctggttgcaacc
gatgttgctgcaaggggaatcgatgttgaaaatgttgaagcagtcttcaactacgatgtt
ccaaacgacgatgagtactacgttcacaggataggaagaacgggtagggctggtaaaaaa
ggaatggcattcacctttgtatctggaaaggagatctatcagttaagggacatacagaag
tacacaaaaaccaagatagaacagcaccagataccatcagtcaaggatgttgaagcaatc
aaaaccaacaaattccttgaaaaagtaaaacacgttatgaacactgaggatcttgagaaa
caggttcgtatagttgaaaaaatgatggaagaagattacagttcagttgaaatggctgca
gctctccttaaaattgtgatgacaagagagggttctgattctgcagctgaagaatttgga
gacacaggggctgaacctgggatggtcagattcttcatgaacgcaggccgtaaacagagg
gtcaaagcaaaggatattgtcaaggccatagctgaacatactggactttcaagttcaaac
atcggtaagatcgatatattcgacaagttctcctttgttgaagttccagaagcaagtgcc
agtgatgtgttttccctcatgaacggtgcaaggatcaagggtaaatccattaacattgaa
cctgcaaacaaaagggaataa
DBGET
integrated database retrieval system
