Mangrovibacillus cuniculi: G8O30_13975
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Entry
G8O30_13975 CDS
T07913
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mcui
Mangrovibacillus cuniculi
Pathway
mcui03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mcui00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
G8O30_13975 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mcui03400
]
G8O30_13975 (mfd)
Enzymes [BR:
mcui01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
G8O30_13975 (mfd)
DNA repair and recombination proteins [BR:
mcui03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
G8O30_13975 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Zot
Cas3-like_C_2
UB2H
RecG_dom3_C
DUF3638
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
QPC48472
UniProt:
A0A7S8HH54
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All DBs
Position
2774194..2777706
Genome browser
AA seq
1170 aa
AA seq
DB search
MLVNHVDVQSIMDGIDEGLNEQLVAGLSGSARAAFIATTYTEKKKSMVVVTHNLLQAQKL
QEDLLGMFGEEKVFLYPADEVIASEISIASPELRAERLTTLQHLATGIKGIYIVPHAGMR
RILPPVELWSKLYRTVNVGQDLDVSQFLLSLVDMGYERVQQVDQPGEFSVRGGIIDVYPP
TEDNPVRLDLFDTEVDSIRSFSLEDQRSLHKIDQLTIGPATEMPITSAERDRLQVELQKA
LSKSLKKTSIPEVKEALSQSVTYEIEQLKEGQTSSQLMKYAALAYEGKTSLLDYFPEDSI
VVLDELSRIYETAEKFEKEEAEWYTSLMEEGKILHDIPLAHSLASLLVDHDLTRIYLSLF
LRKVAHTSPQNIVNISCKQMQHFHGQSELLATEIKRWKKAKYTVLFFAPDESRKKKIKDL
LDDIEVDVAIQGGSEFHEGVVQILQGQLQTGFEIPALKLAVITEEELVFKRAKKAPRRQK
MSNAERIKSYSELKNGDYIVHVNHGIGRYLGIETLEINGVHKDYLHLRYSGDDKLYVPVE
QIDLVQKYVGSEGKEPKIYKLGGSDWKRVKNKVEKSVQDIADDLIKLYAEREAARGYAFS
PDGEMQREFESSFPYQETEDQERSIQEIKYDMERERPMDRLLCGDVGYGKTEVAIRAVFK
AIADGKQVAFLVPTTILAQQHYETMKERFQGFPVNVGVLSRFRTRKEQQETMKGLSEGTV
DVVVGTHRLLSKEIKYKDLGLLIIDEEQRFGVTHKEKIKQLKTNIDVLTLTATPIPRTLH
MSMLGVRDLSVIETPPENRFPVQTYVMEYNGAMVKEAIERELARDGQVYFLYNRVEDIAR
KAEEISMLVPDARVTYAHGQMTEQELEAVILSFLEGEYDVLVTTTIIETGVDIPNVNTMI
VHQADRMGLSQLYQLRGRVGRSSRVAYAYFTYQKDKVLNEVAEKRLQAIKEFTELGSGFK
IAMRDLSIRGAGNLLGAQQHGFIDSVGFDLYSQMLQEAIETKRGNGVKEEEKSNLELDIQ
VDAYIPDTYISDSAAKINMYKRFRGLETIQDLQDLKDELLDRFGDYPQEVADLFRVSEIR
IYGRFAKLEKIKQDREAIHIFMSEEGSKEVDGSKVFELTSNLGRDVGLGMEGQQMKLSIY
LKRNQKEPWFDRLYQLVKLLPDTKKEVEPV
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgttagtaaatcatgtcgacgttcaatcgattatggatgggatagatgaagggttaaat
gagcaactcgttgctggtttatctggatctgcaagagcagcgttcattgccactacctat
acggaaaagaaaaaaagtatggtagtggtgacacataatttattacaggctcaaaagtta
caagaagatctacttggaatgttcggggaagagaaagtatttttatatcctgctgatgaa
gtaattgcttctgaaattagtatagctagtcctgaactgcgcgcagaacgtttaacaaca
ctccagcatttagcaactggtattaaaggtatctatattgttccccatgcgggtatgaga
aggatattacctccagttgagttgtggtccaaattatatagaacagtaaatgtagggcaa
gaccttgatgtatcacaattccttctttctcttgtagacatggggtatgaaagagttcaa
caagttgatcaaccgggtgaatttagtgtacgtggtggaattattgacgtgtatcctcct
acagaagataatcctgttcgtttagatttatttgatacggaagtagattccataagaagt
ttttcattagaagatcaacgctctttacataagattgatcaattaacaataggtcctgca
acagagatgccaattacttcagctgaacgtgaccgattacaagtagaattacagaaggct
ttgtctaagagtctcaaaaagacaagtattccagaagtaaaagaagcactatcccaatcc
gtaacatatgagatagaacaattaaaagaaggtcaaacttcttctcagttaatgaagtat
gcagccctagcttatgaagggaaaactagtttactagattacttccctgaggatagcata
gtcgttttagacgaacttagccgaatctatgagacagctgaaaaatttgaaaaagaagaa
gcggaatggtatacgagtttaatggaggaaggtaagattcttcatgacattccattagca
catagtcttgcttcgttgttagttgatcatgatttgacgagaatatatttatcattattt
ttacgaaaagtagcgcacactagcccacaaaacattgttaatatctcgtgtaagcaaatg
cagcacttccatggtcaatcagaactcttagcgacagaaatcaaaaggtggaagaaagct
aagtatacggtgttgttctttgcccctgatgaaagcagaaagaaaaagataaaagattta
ctagatgatattgaagtagacgttgctatacagggcggatctgaatttcatgaaggtgtt
gttcaaatacttcaaggtcaacttcaaacaggatttgaaattccagctttgaaattagcc
gttattacggaagaagaattggtatttaaacgagcaaaaaaagctcctcgtagacaaaaa
atgtctaatgccgaacgaattaaaagttactcagaattaaaaaatggtgactacatcgta
cacgtaaaccatggtattggtcgttacttaggtattgagacgctagagattaatggtgtt
cataaagattatcttcatctacgttattctggtgatgataaattgtatgtaccagtagaa
caaattgacttagttcaaaagtatgtaggttctgaaggaaaagagcctaagatctataaa
cttggtggatctgattggaagcgtgtaaaaaataaagtagagaaatctgttcaagatatt
gcggatgatctaattaagttatatgcagaacgagaagcagctagagggtacgcattttct
ccagatggagagatgcaaagagaatttgaatcttcgttcccttatcaggagacagaagac
caagaacgttccatccaagagattaaatatgatatggaacgagaacgaccaatggatcga
ttactctgtggagatgttggatatggcaaaacagaagtagctataagagccgtttttaaa
gcgattgctgatggaaaacaagtagcattcttagttccaacaaccatcctggcacagcag
cattatgaaacaatgaaagagcgttttcaaggtttccctgtaaatgtgggtgttttaagt
cgttttagaacgcgaaaagaacaacaagagacgatgaaaggtcttagtgaaggtacagta
gacgtagttgtagggacccatcgattgctatcaaaagagattaagtataaagatttagga
ttgttaatcatagatgaagagcaacgttttggcgtaacgcataaggaaaaaattaaacaa
ttaaagacgaatatcgatgtattaacgttaacagctaccccaatacctagaacgcttcat
atgtcaatgcttggagttcgtgacttgtctgttattgagacgcctccggaaaatcgattt
ccagtacagacgtacgtaatggaatacaacggtgcaatggtgaaagaagctatcgagcga
gagcttgctcgtgatgggcaagtttactttttatataaccgggtagaagatatagcaagg
aaagcagaagaaatatctatgttagtacctgatgcaagagtaacgtatgctcatggacaa
atgaccgaacaagaactagaagcagtgattttgagtttcttagaaggtgaatatgatgtg
ttggtaacaacaactattattgaaactggagtcgatattcctaacgtaaatacaatgatt
gttcatcaagcagatcgtatgggtctatcacagttgtatcaattaagaggtcgagttggt
aggtcaagtcgcgtcgcatatgcgtatttcacgtatcaaaaagataaagttttaaatgaa
gtagcagaaaaacgattacaagcgattaaggaattcacagagctaggatctggatttaag
atcgcaatgcgtgatttatctatacgaggtgcagggaatttacttggcgcacaacaacat
ggatttattgattctgtaggatttgacctatactctcaaatgttacaggaagcaattgaa
acaaagcgtggcaatggtgtgaaagaagaggagaaatctaatctagaactagatatccaa
gtagatgcgtacatcccagatacgtatatctcagatagcgctgctaaaattaatatgtat
aagcgttttagaggcttagaaacaatccaggaccttcaagacttaaaagatgagttacta
gatcgttttggcgactatccacaagaggttgctgatttattccgtgtatcggaaattaga
atttatggtcgatttgcaaagctagagaagattaagcaagaccgagaagcgattcatatt
ttcatgtcagaagaagggtcaaaagaagtggatggttctaaagtctttgagttaaccagt
aatctaggtagagatgtagggttaggaatggaaggacaacaaatgaaactttccatctac
ttaaagagaaatcaaaaggaaccgtggtttgaccgactatatcagctagttaaactgtta
cctgacacgaaaaaagaagtagaaccagtttaa
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