Mycobacterium canettii CIPT 140070008: BN43_40104
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Entry
BN43_40104 CDS
T02420
Symbol
rne
Name
(GenBank) Putative ribonuclease E Rne
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mcv
Mycobacterium canettii CIPT 140070008
Pathway
mcv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN43_40104 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcv03019
]
BN43_40104 (rne)
03009 Ribosome biogenesis [BR:
mcv03009
]
BN43_40104 (rne)
Enzymes [BR:
mcv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BN43_40104 (rne)
Messenger RNA biogenesis [BR:
mcv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BN43_40104 (rne)
Ribosome biogenesis [BR:
mcv03009
]
Prokaryotic type
rRNA processing factors
BN43_40104 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
IF2_N
PCB_OB
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
CCK56495
LinkDB
All DBs
Position
complement(2797262..2800126)
Genome browser
AA seq
954 aa
AA seq
DB search
MIDGAPPSDPPEPSQHEELPDRLRVHSLARTLGTTSRRVLDALTALDGRVRSAHSTVDRV
DAVRVRDLLATHLETAGVLAASVHAPEASEEPESRLMLETQETRNADVERPHYMPLFVAP
QPIPEPLADDEDVDDGPDYVADDSDADDEGQLDRPANRRRRRGRRGRGRGRGEQGGSDGD
PVDQQSEPRAQQLTSADAAETDDGDDRDSEDTEAGDNGEDENGSLEAGNRRRRRRRRRKS
ASGDDNDAAALEGPLPDDPPNTVVHERAPRAGDKAGNSQDGGSGSTEIKGIDGSTRLEAK
RQRRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRVRTEPPLPGTRYTQIAVLEDG
IVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGLGG
ADRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGASSTGISRKLPDT
ERQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQETKEKAAG
AAVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKYESAD
GPDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGAGGN
LEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDRTRH
QVSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPVDSAAATGRKSEPGAR
RGKRSKKCRSEESSDRSMVAKVPVHAPGEHPMFKAMAAGLSSLAGRGDEESGEPAAELAE
QAGDQPPTDLDDTAQADFEDTEDTDEDEDELDADEDLEDLDDEDLDEDLDVEDSDSDDED
SDEDAADADVDEEDAAGLDGSPGEVDVPGVTELAPTRPRRRVAGRPAGPPIRLD
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
gtgatagacggtgccccaccttcagatccaccagaaccgagccagcatgaggaactgccg
gaccgcctaagagtccattcgctggcacgaacgctgggaaccaccagcaggcgggtgctg
gatgcgctcaccgcgctcgacggacgggtccgcagcgcacattccacggtggatcgcgtc
gatgcggtccgggtgcgcgatctgctggccactcatctcgagactgccggcgtgctggcg
gcctcggtccatgcgcccgaagcgtccgaggaacccgagtcccggctgatgctagagacc
caggagactcggaatgccgacgtggagcggccgcactatatgccgctgttcgtcgcgccc
cagccgattcccgagccgttagcggacgacgaggacgtcgacgatggccccgactacgtc
gccgacgattccgacgctgacgacgaagggcagctagaccggccggcgaaccggcggcga
cgtcgcggccgtcggggtcgcggtcgcggacgcggggagcagggtggatccgacggtgat
ccggttgaccagcaatccgagccccgggcccaacaattgaccagcgcggacgccgccgaa
accgacgacggcgacgatcgagattccgaagataccgaagccggtgacaacggcgaggac
gaaaacggttcgctggaggccggcaatcgtcgccggcgccgccggcgacggcgtaagtcg
gcttctggtgacgacaacgacgcggctgcgttagagggcccgttgcctgacgatccgccc
aacactgtcgtacacgaacgcgcgccccgcgcgggtgacaaggccggcaactcgcaggat
ggcggctctggctccactgagatcaagggcatcgacggctcgacccgcctggaagccaag
cggcaacgccgccgcgacgggcgcgacgccggccggcgccgcccaccggtgttgagtgag
gccgagtttctggctcgccgtgaggcggtcgagcgggtgatggtggtgcgcgaccgggtc
cgcaccgagccaccgctgccgggcacgcggtacacccagattgcggtgctcgaagacggt
atcgtcgtggagcatttcgtgacgtctgcggcctcggcttccctggtgggcaacatctac
ctggggattgtgcagaacgtgctgccgtcgatggaggcggcgttcgtcgacatcgggcgc
ggtcgcaatggagtgctctacgccggtgaagtcaattgggatgcagcggggttgggcggg
gccgatcgcaagatcgagcaggccctcaaacccggcgactatgttgtggtgcaggtcagc
aaggacccggtagggcataagggcgcgcggctgaccacgcaggtgtcgctggccggtcga
tttctggtttatgtgccgggcgcgtcgtcgaccgggatcagccgcaagctgcccgacacc
gaacgtcagcggctcaaggagatcctgcgcgaggtggtgccgtctgacgctggggtcatc
atccgtaccgcgtctgagggcgtcaaagaggacgacattcgcgcagacgtcgctcggcta
cgggaacgctgggagcagatcgaggccaaggcacaagagaccaaggagaaggccgcgggc
gctgcggtggcgctgtacgaagaaccggacgtgctggtcaaggttatccgtgacctgttc
aacgaggacttcgtcggcctcatcgtttccggcgacgaggcttggaacacgatcaatgaa
tacgtgaattctgttgctcccgaattggtttcgaagttgaccaagtacgagtccgctgac
gggccggatggccagtccgcgccggacgtcttcacggtgcaccgcattgacgagcagctg
gccaaagcgatggaccgcaaggtgtggttgccgtcgggcgggacgctggtgatcgaccgg
accgaagccatgacggtcattgacgtcaacaccggtaaattcaccggagccgggggcaac
ctcgagcagacggtcaccaagaacaatctggaagcggccgaggagatcgtgcgccagctg
cggctgcgcgatatcggcggcatcgtggtcatcgacttcatcgacatggtgctggagtcc
aaccgcgacttggtgttgcgccggttgaccgagtcgctggcccgcgatcgcacccgccac
caggtgtccgaggtgacgtcgctggggctggtgcagttgactcgcaagcggttgggaacc
ggactgatcgaagcgttctccacatcgtgtccgaactgcagtggccgcgggatcctgctg
cacgccgacccggtcgattcggccgcggcgactgggcgaaagtctgagcccggtgctcgg
cggggcaagcgatcgaaaaagtgccggtccgaagagtccagtgataggagcatggtcgcc
aaggtccccgtgcacgctcccggtgagcatcccatgttcaaggcgatggcagcgggcttg
tcctcgctggctggtcgcggtgacgaggaatccggggagcccgctgccgaactcgccgag
caggccggcgatcaaccgcccactgacctcgacgacaccgcccaagcggacttcgaggac
accgaggacaccgacgaagacgaggacgagctcgacgccgacgaggacctcgaggacctc
gacgacgaggacctcgacgaggatctcgacgttgaagactccgattccgacgacgaagac
tccgacgaagacgccgccgatgccgacgtcgacgaggaggatgcagccggcttggacggt
tccccgggcgaagtcgacgtccccggtgtcacggagctggcccctacccgtccacgtcgg
cgcgttgcgggccggccggccggcccaccaatccgcctagactga
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