Mycobacterium canettii CIPT 140070010: BN42_20845
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Entry
BN42_20845 CDS
T02421
Symbol
mfd
Name
(GenBank) Putative transcription-repair coupling factor Mfd (TRCF)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mcx
Mycobacterium canettii CIPT 140070010
Pathway
mcx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mcx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BN42_20845 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mcx03400
]
BN42_20845 (mfd)
Enzymes [BR:
mcx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BN42_20845 (mfd)
DNA repair and recombination proteins [BR:
mcx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BN42_20845 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
Cas3-like_C_2
ResIII
LSDAT_prok
Motif
Other DBs
NCBI-ProteinID:
CCK59062
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All DBs
Position
1183234..1186950
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AA seq
1238 aa
AA seq
DB search
MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGSRPDELTLIGPASARLLVASALARQG
PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPSVDTVGTRLMVLRRLAQ
PDLDSDGAALGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGVQSPFDGVVARLVELAY
TRVDMVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITGMRMFSVADQRSIPEIDIHT
LVAFACRELLLSEEVRARAAQLAARHPAAESTVAGSASDMLAKLAEGIPVDGMEALLPVL
WSDGHALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVD
VEQLGGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFA
MLRAHIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLKGPLRDG
VIIPGANLVVITETDLTGSRVSAVEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVE
MAERTVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGS
DWANTKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTA
IEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQT
FGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVV
DEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLT
YVGPHDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPED
LLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRE
RGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVA
GVGFDLYVRLVGEALETYRDAYRAAADGHTVRTAEEPKDVRIDLPVDAHLPPDYIASDRL
RLEGYRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAAS
AATVRLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGGLGAPRIRDVELVQMVA
DLITALAGKPRQHIGITNPSPPGEDGRGRNTTIKERQP
NT seq
3717 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaccggggcctgcctgctcagataccccgatcgcggggctcgtcgaattggcg
ctgagcgcgccgacattccaacagctcatgcagcgcgccgggagtcgacccgacgaattg
acgctcatcgggccggccagcgcgcggctgttggtcgccagtgcgctggctcggcagggg
ccattgctggtggtcaccgccaccgggcgggaagccgacgacctggccgccgaactgcgt
ggtgtgttcggggatgcggtggcgttgttgccgtcctgggagacactgccgcacgaacgg
ctctcacccagtgttgacaccgtcggcactcgcctgatggtgctacgccggctggcccag
cccgacctcgattccgacggggccgcattggggcccccgctgggggtagtggtgacctcg
gtgcgctcgctgctgcagcccatgacgccgcagctgggcatgatggagcccctcacgctc
accgttggcgtgcaatcccccttcgacggcgtggtggcgcggctggtcgagctggcatat
acccgggtggatatggtcggccggcgcggcgagttcgctgtgcgcggcgggattctggac
atctttgccccgacggccgaacatccggtgcgggtcgagttctggggcgacgagatcacc
gggatgcggatgttctcggtggccgaccagcgctcgattccggagatcgacattcacaca
ctggttgccttcgcctgccgtgaactgctgctgagcgaggaagtgcgggcgcgggccgcc
caactggccgcacggcatcccgcggccgagagcaccgtcgccggcagtgcttccgacatg
ctggcgaagctcgccgagggcatcccggtcgacggcatggaggcgctgttgccggtgctc
tggtccgacgggcacgcgttgctgaccgatcagctgcccgacggcacgccggtgttggtg
tgcgacccggaaaaggtgcgcacccgcgccgcggatctgatcaggactggccgtgaattc
ctggaagcctcgtggtcggtcgcggcgctgggaactgcagaaaatcaagcccccgtcgac
gtcgaacaactgggtgggtcggggttcgtcgaactggaccaggtgcgggccgcggcggcc
cgaacgggtcatccgtggtggacgttgagccaattgtccgacgagtcggcgatcgagctg
gacgttcgggccgcgccgtcggcgcgcgggcaccagcgtgacatcgacgaaatcttcgcg
atgctacgtgcccacatcgcgaccggcgggtacgccgcgctggtcgcgccgggcaccgga
accgcacaccgcgtggtggaacggctgtccgagtccgacacccccgcggggatgctcgat
cccggccaggcgcccaagccgggagtcgtcggggtgctgaagggcccgctgcgtgacggc
gtcatcattcccggcgccaacctggtcgtcatcaccgagaccgatttgaccggcagccgg
gtcagcgccgtcgagggcaagcggctggcggccaagcggcgcaacatcgtcgacccgctg
gcgctgacggccggtgacctggtggtgcacgatcagcacggcatcggccggttcgtggag
atggccgagcgcacggtcgggggcgcccgccgggagtatctggtgctggagtatgcctcg
gccaagaggggtggcggggcgaaaaatactgacaagctctatgtcccgatggattcgctg
gaccagctgtcgcggtatgtcggcgggcaggcgccggcgctgagccggctgggcggcagc
gactgggccaacaccaagaccaaggcgcgccgcgcggtgcgcgagatcgcgggcgagctg
gtctcgctgtacgccaaacggcaggccagccccgggcatgcgttctcgccggacacgccg
tggcaggccgagctggaggacgcgttcggcttcaccgagaccgtggaccagctcaccgcc
atcgaagaggtcaaggcggacatggaaaagccgatcccgatggaccgggtgatctgcggc
gatgtcggctacggcaagaccgagatcgcggtgcgggcggcgttcaaggcggtccaagac
ggtaaacaggtcgcggtgctggtgcccactacgctgctggccgaccagcatctgcagacg
ttcggcgagcgaatgtccggattcccggtgaccatcaagggtctgtcgcggttcaccgac
gccgccgagtcccgcgccgtgatcgacggcctggccgacgggtcggtggacatcgtgatc
ggcacccatcggctgctgcagaccggggtgcgctggaaggatctgggcctggtggtggtc
gacgaggagcagcggttcggcgtcgagcacaaggagcacatcaagtcactgcgcacccat
gtcgacgtgctgaccatgagcgccaccccgatcccgcgcacgttggagatgagcctggcc
gggattcgcgagatgtcgaccatcctgacgccgcccgaggagcgctacccggtgctgacc
tacgtcggaccgcacgacgacaagcagatcgccgcggcgctgcgccgggagctgctgcgc
gacgggcaggcgttctacgtgcataaccgggtcagctcgatcgacgcggccgccgcccgg
gtgcgtgagctggtgcccgaggcgcgggtggtggtcgcgcacgggcagatgcccgaggac
ctgttggagaccaccgtgcaacggttctggaaccgcgagcatgacatcctggtttgcacc
accatcgtggagaccggcctggacatctccaacgccaacactttgatcgtcgagcgcgcc
gataccttcgggctgtcccagctgcaccagctgcgtggccgggtgggccgcagccgggag
cgcggctacgcctatttcctctatccaccgcaggtgccgctgaccgagaccgcttacgac
cggttggcgacgatcgcgcagaacaatgagctgggcgcgggcatggccgtggcgttgaag
gacctagagatccgcggcgccggcaacgtgctcggcatcgagcagtccggacacgtcgcc
ggcgtcggattcgacctgtacgtgcggttggtcggcgaggccctggagacgtaccgggac
gcataccgggcggccgccgacggccacaccgtgcggaccgccgaagaacccaaggatgtg
cgcatcgacctgcccgttgacgcgcacctgccaccggactacatcgccagtgaccggctg
cggctggagggctaccggcggctggcggccgcctcctctgatcgcgaagtggcggccgtt
gtggacgagctaaccgaccggtatggggccctgccggagccggcccggcggctggcggcg
gtggcacggctgcggctgctgtgccgtggctccggcatcaccgacgtgacggcggcgtcg
gcggcgaccgtgcggctgtccccgctgacgctgccggactccgcccaggtgcggctgaag
cgaatgtatcccggagcgcactaccgtgccacgacggccaccgtgcaggttcccattccg
cgagccggtggcctcggcgcgccgcgaatccgcgacgtcgagctggttcagatggtggcc
gatttgataaccgcgctcgctgggaaaccgcgccagcatattggtataacgaaccctagc
ccgccaggcgaagacggccgtggtcgcaacacgacgattaaggagcgacaaccgtga
DBGET
integrated database retrieval system
