Mycobacterium canettii CIPT 140070010: BN42_21127
Help
Entry
BN42_21127 CDS
T02421
Symbol
deaD
Name
(GenBank) Putative cold-shock dead-box protein a homolog DeaD (ATP-dependent RNA helicase DeaD homolog)
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mcx
Mycobacterium canettii CIPT 140070010
Pathway
mcx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN42_21127 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcx03019
]
BN42_21127 (deaD)
03009 Ribosome biogenesis [BR:
mcx03009
]
BN42_21127 (deaD)
Enzymes [BR:
mcx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BN42_21127 (deaD)
Messenger RNA biogenesis [BR:
mcx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BN42_21127 (deaD)
Ribosome biogenesis [BR:
mcx03009
]
Prokaryotic type
rRNA helicases
BN42_21127 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
HEM4
UvrA_inter
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CCK59308
LinkDB
All DBs
Position
1459540..1461231
Genome browser
AA seq
563 aa
AA seq
DB search
MAFPEYSPAASAATFADLQIPPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTG
TGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAQLPQLNVLPIYGGS
SYAVQLAGLRRGAQVVVGTPGRVVDHLERATLDLSRVDFLVLDEADEMLTMGFAEDVERI
LSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDA
LTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAINGDVPQAQRERTIAALRDGG
IDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELH
LLKAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHD
VPMADIAAALAVQCRGGEAFLMAPDPPLPRRNRDQRRDRPQRPKRRPDLTTYRVAVGKRH
KIGPGAIVGAIANEGGLHRSDFGQISIGPDFSLVELPAKLPRATFKKLAQTRISGVLIDL
RPYRPPDAARRHNGGKPRRKHVG
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atggccttcccggaatattcgcctgcggcgtccgctgcgacgtttgccgacctgcagatt
cctccccgtgtcttgcgggcgatcggcgacgtcggttacgagtcaccgacggctatccag
gcggctacgatcccggcgttgatggcaggctccgacgtggtggggctggcgcagaccggc
accggcaagacggcggcattcgcgattccgatgctgtccaagatcgacatcaccagcaag
gtgccccaggcgctggtgctggtgcccacccgggagctggctctacaggttgccgaggcg
ttcggccgctatggtgctcagctgccgcaactcaacgtgctgccgatctacggcggatca
tcgtatgccgtgcaactggccgggttgagacgcggcgcgcaggtggtggtcggcaccccc
ggtcgggtagtagaccatctcgaacgcgcgactctggacctgtcacgggtggattttcta
gtgctcgatgaggccgatgagatgctcaccatgggtttcgccgaagacgttgaacgcatc
ctgtccgagaccccggaatacaagcaggtcgccctgttttcggcaactatgccgccggcg
atccgcaaactcagcgccaagtatctgcatgatccgttcgaagtcacttgtaaggcgaaa
accgctgtggccgagaatatttcgcagagctacattcaagtagcgcggaagatggacgcg
ctcaccagagtgctcgaagtcgagccgttcgaggcgatgatcgtctttgtccgcaccaag
caggcgaccgaggagattgccgaaaaactgcgtgcccgagggttttccgctgctgccatc
aacggtgacgtcccgcaggcgcagcgggagcggaccatcgcggcgctgcgggacggcggc
atcgatatcctggtcgccaccgatgtggcggcgcgcggactcgacgtggagcggatatca
cacgtgcttaactacgacatcccgcacgacaccgagtcctacgtacaccggatcgggcgc
accggcagggccgggcgttcgggagccgcgctgatattcgtctcgccgcgggagcttcac
ttgcttaaggcgatcgaaaaagctacgcggcaaacgcttaccgaggcgcaattgcccacc
gtcgaggatgtcaacacccagcgggtggctaagttcgccgattccatcaccaatgcgctg
ggcggtccgggaatcgagctgttccgccgactggtcgaggagtatgaacgcgagcacgat
gtcccgatggctgacatcgccgcggcactggccgtgcagtgccgcggcggtgaggcattc
ctgatggcacccgacccgccgctgccgcggcgcaaccgcgaccagcgtcgggaccgtccg
caaaggcccaagcgtagaccggacttgaccacctaccgcgtcgccgtcggcaagcggcac
aagatcggtccaggcgccatcgtcggcgccatcgccaatgagggtgggttgcaccgcagc
gacttcgggcagatcagcatcgggccagacttctcgctagtagaattgccggcgaagctg
ccccgcgcgacgttcaaaaagcttgcgcagacccgtatctcgggtgtgctgatcgacctt
cggccataccggccgcctgacgcggcgcgccggcataatggcggcaaaccacggcggaaa
cacgtcggatga
DBGET
integrated database retrieval system
