Mycobacterium canettii CIPT 140070010: BN42_40392
Help
Entry
BN42_40392 CDS
T02421
Symbol
rne
Name
(GenBank) Putative ribonuclease E Rne
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mcx
Mycobacterium canettii CIPT 140070010
Pathway
mcx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN42_40392 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcx03019
]
BN42_40392 (rne)
03009 Ribosome biogenesis [BR:
mcx03009
]
BN42_40392 (rne)
Enzymes [BR:
mcx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BN42_40392 (rne)
Messenger RNA biogenesis [BR:
mcx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BN42_40392 (rne)
Ribosome biogenesis [BR:
mcx03009
]
Prokaryotic type
rRNA processing factors
BN42_40392 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
IF2_N
PCB_OB
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
CCK60556
LinkDB
All DBs
Position
complement(2865839..2868703)
Genome browser
AA seq
954 aa
AA seq
DB search
MIDGAPPSDPPEPSQHEELPDRLRVHSLARTLGTTSRRVLDALSALDGRVRSAHSTVDRV
DAVRVRDLLATHLETSGVLAASVHAPEASEEPESRLMLETQETRNADVERPHYMPLFVAP
QPIPEPLADDEDVDDGPHYVADDSDADDEGQLDRPANRRRRRGRRGRGRGRGEQGGSDGD
PVDQQSEPRAQQLTSADAAETDDSDDRDSEDTEAGDNGEDENGSLEAGNRRRRRRRRRKS
GSGDDNDPAALEGPLPDDPPNTVVHERAPRAGDKAGNSQDGGSGSTEIKGIDGSTRLEAK
RQRRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRVRTEPPLPGTRYTQIAVLEDG
IVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGLGG
ADRKIEQALKPGDYVMVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGASSTGISRKLPDT
ERQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQETKEKAAG
AAVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKYESAD
GPDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGAGGN
LEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDRTRH
QVSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPVDSAAATGRKSEPGAR
RGKRSKKSRSEESSDRSMVAKVPVHAPGEHPMFKAMAAGLSSLAGRGDEESGEPAAELAE
QAGDQPPTDLDDTAQADFEDTEDTDEDEDELDADEDLEDLDDEDLDEDLDVEDSDSDDED
SDEDAADADVDEEDAAGLDGSPGEIDVPGVTELAPTRPRRRVAGRPAGPPIRLD
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
gtgatagacggtgccccaccttcagatccaccagaaccgagccagcatgaggaactgccg
gaccgcctaagagtccattcgctggcacgaacgctgggaaccaccagcaggcgggtgctg
gatgcgctctccgcgctcgacggacgggtccgcagcgcacattccacggtggatcgcgtc
gatgcggtccgggtgcgcgatctgctggccactcatctcgagacttccggcgtgctggcg
gcctcggtccatgcgcccgaagcgtccgaggaacccgagtcccggctgatgctcgagacc
caggagactcggaatgccgacgtggagcggccgcactatatgccgctgttcgtcgcgccc
cagccgattcccgagccgttagcggacgacgaggacgtcgacgatggcccccactacgtc
gccgacgattccgacgctgacgacgaagggcagctagaccggccggcgaaccggcggcga
cgtcgcggccgtcggggtcgcggtcgcggacgtggggagcagggtggatccgacggtgat
ccggttgaccagcaatccgagccccgggcccaacaattgaccagcgcggacgccgccgaa
accgacgacagcgacgatcgagattccgaagataccgaagccggtgacaacggcgaggac
gaaaacggttcgctggaggccggcaatcgtcgccggcgccgccggcgacggcgtaagtcg
ggttctggtgacgacaacgacccggctgcgttagagggcccgttgcctgacgatccgccc
aacaccgtggtacacgaacgtgcgccccgcgcgggtgacaaggccggcaactcgcaggat
ggcggctctggctccactgagatcaagggcatcgacggctcgacccgcctggaagccaag
cggcaacgccgccgcgacgggcgtgacgccggccggcgccgcccaccggtgttgagtgag
gccgagtttctggctcgtcgtgaggcagtcgagcgggtgatggtggtgcgcgaccgggtc
cgcaccgagccaccgctgccgggcacgcggtacacccagatcgcggtgctcgaagacggt
atcgtcgtggagcatttcgtgacgtctgcggcctcggcttccctggtgggcaacatctac
ctgggaatcgtgcagaacgtgctgccgtcgatggaggcggcgttcgtcgacatcgggcgc
ggtcgcaatggagtgctctacgccggtgaagtcaattgggatgcagcggggttgggcggg
gccgatcgcaagatcgagcaggccctcaaacccggcgactatgtcatggtgcaggtcagc
aaggacccggtagggcataagggcgcgcggctgaccacgcaggtgtcgctggccggtcga
tttctggtttatgtgccgggcgcgtcgtcgaccgggatcagccgcaagctgcccgacacc
gaacgtcagcggctcaaggagatcctgcgcgaggtggtgccgtctgacgctggggtcatc
atccgtaccgcgtccgagggcgtcaaagaggacgacattcgcgcagacgtcgctcggcta
cgggaacgctgggagcagatcgaggccaaggcgcaagagaccaaggagaaggccgcgggc
gctgcggtggcgctgtacgaagaaccggacgtgctggtcaaggttatccgtgacctgttc
aacgaggacttcgtcggcctcatcgtttccggcgacgaggcttggaacacgatcaatgaa
tacgtgaattctgttgctcccgaattggtttcgaagttgaccaagtacgagtccgctgac
gggccggatggacagtccgcgccggacgtcttcacggtgcaccgcattgacgagcagctg
gccaaagcgatggaccgcaaggtgtggttgccgtcgggcgggacgctggtgatcgaccgg
accgaagccatgacggtcattgacgtcaacaccggtaaattcaccggagccgggggcaac
ctcgagcagacggtcaccaagaacaatctggaagcggccgaggagatcgtgcgccagctg
cggctgcgcgatattggcggcatcgtggtcatcgacttcatcgacatggtgctggagtcc
aaccgcgacttggtgttgcgccggttgaccgagtcgctggcccgcgatcgcacccgccac
caggtgtccgaggtgacgtcgctggggctggtgcagttgactcgcaagcggttgggaacc
ggactgatcgaagcgttctccacatcgtgtccgaactgcagcggccgcgggatcctgctg
cacgccgacccggtcgattcggccgcggcgactgggcgaaagtctgagcccggtgctcgg
cggggcaagcgatcgaaaaagagccggtccgaagagtccagtgataggagcatggtcgcc
aaggtccccgtgcacgctcccggtgagcatcccatgttcaaggcgatggcagcgggcttg
tcctcgctggctggtcgcggtgacgaggaatccggggagcccgctgccgaactcgccgag
caggccggcgatcaaccgcccactgacctcgacgacaccgcccaagcggacttcgaggac
accgaggacaccgacgaagacgaggacgagctcgacgccgacgaggacctcgaggacctc
gacgacgaggacctcgacgaggatctcgacgttgaagactccgattccgacgacgaagac
tccgacgaagacgccgccgatgccgacgtcgacgaggaggatgcagccggcttggacggt
tccccgggcgaaatcgacgtacccggtgtcacggagctggcccctacccgtccacgtcgg
cgcgttgcgggccggccggccggcccaccaatccgcctagactga
DBGET
integrated database retrieval system
