Mycoplasmopsis cynos: MCYN_0350
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Entry
MCYN_0350 CDS
T02424
Symbol
MCYN0350
Name
(GenBank) VACB-like ribonuclease II
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mcy
Mycoplasmopsis cynos
Pathway
mcy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MCYN_0350 (MCYN0350)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcy03019
]
MCYN_0350 (MCYN0350)
03016 Transfer RNA biogenesis [BR:
mcy03016
]
MCYN_0350 (MCYN0350)
Enzymes [BR:
mcy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MCYN_0350 (MCYN0350)
Messenger RNA biogenesis [BR:
mcy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MCYN_0350 (MCYN0350)
Transfer RNA biogenesis [BR:
mcy03016
]
Prokaryotic type
tRNA degradation factors
MCYN_0350 (MCYN0350)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
SporV_AA
Motif
Other DBs
NCBI-ProteinID:
CCP24082
UniProt:
L0RVI0
LinkDB
All DBs
Position
355093..357309
Genome browser
AA seq
738 aa
AA seq
DB search
MNSKEIIDYLSKYKSRSFLEIARFFKISAHNNKSLTSVLSQLQKEYKIFKNNKDEYYAPI
LSQSIVGNLSVSAKGPFGFVDYDINEINNTKKSVFIKSFNFNGAIHNDTVQVNIYINPHD
NESNNSEGVITNVIQRNNTEVQGFIKHKNNTIYFSPVDSRYQNLTWVIVSKQVQTKLNDL
VVAEIQKYDQKIVFINIVKVITNESDPMVFVKYYLESIKVPNDFPSLLEREIHNIPLSIK
NENQNDRINLTSKMIVTIDGDDTKDFDDAIYVKKLANGNFILGVYIADVSYYVKEDTLID
QEALKRGTSIYLVDRVIPMLPIELSNGICSLNPNEERFVIACEMEIDKNGKNLNVNVFPG
IIESKFRLTYKQVDNYFKTNDLGFNNEPNNLLELKSMLNDARDLSLILHKYKINEGYVDF
EISEPKIKLDEFGSVKEIIINQRGFSEVLIEDFMVRANETIAKYLTMQKLPVLYRIHETP
DELKISNLKNTLFAMNIKDIKLDSKTINPKNFAELVGQINKIRNDDFIKMMFLRTMQKAV
YSENNIGHFGLASKFYCHFTSPIRRYPDLVIHRIIREFIFNKNLNELESFTNKMSLYSDL
NTKAEQKAVQIERNVNDLKFAEFLKNRIGSVFKAQILSITNFGFFVEFDFKASGMIHKST
LVDGVYEANETLTKFSNGTKTFILGDFVNVVVVGVDLVEGKIDCVLEDLYLAYLNAKKAS
FEHKKKTPKHTLKSKGKG
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atgaattcaaaagaaataatagattatctttctaaatacaaatcacgttcatttttagaa
atagcaagattctttaaaatatcagcacataataataaatctttaacatctgttttatcc
caattacaaaaagaatataaaatttttaaaaataataaagatgaatattatgcacctatt
ttatctcaaagcattgtaggaaatttatccgtttctgccaaaggtccattcggatttgtg
gattatgatattaacgaaatcaataatacaaaaaaaagcgtttttattaaatcatttaat
tttaatggtgcaatacataatgatactgttcaagtaaatatttacataaatcctcatgac
aatgaatctaataattctgaaggtgttataacaaatgtaattcaaaggaacaatactgaa
gttcaaggttttattaaacataaaaataatacaatatatttttcaccagttgattccaga
taccagaatttaacgtgagtaattgtttctaagcaagttcaaactaaactaaatgattta
gttgtagctgaaatccaaaaatatgaccaaaagattgtgtttattaatatagttaaagta
ataactaatgaatctgatccgatggtatttgtcaaatattatttagaatcaattaaagtt
ccgaatgattttcctagtcttttagaaagagaaattcataatattcctttatcaataaaa
aatgaaaatcaaaatgatcgtatcaatcttacttcaaaaatgattgttacaattgacggt
gatgatactaaagattttgatgatgctatttatgttaaaaagctagctaatggtaatttt
attttaggtgtttatattgctgatgtatcttattatgttaaagaagatactttaattgat
caagaagcattaaaaagaggaacaagtatttatttagttgatcgagtaataccgatgttg
ccaatcgagttatcaaatggaatttgttcattaaatccaaatgaagaaagatttgtaatc
gcttgcgaaatggaaattgataaaaatggtaaaaatttaaatgttaatgtatttccagga
attattgaaagtaaatttagactaacatataagcaagttgataattattttaaaactaat
gatctaggttttaataatgaacctaataacttactagaattaaaatcgatgttaaatgat
gcaagagatttaagtttaattttgcataaatataaaattaatgaaggatatgttgatttt
gaaatttctgaacctaaaataaaactagatgaatttggttcggtgaaagaaattattatt
aatcaaagaggattttcagaagttttaattgaagattttatggtacgggcaaatgaaact
attgctaaatatttaactatgcagaaattaccagttttatatagaattcatgaaacacct
gacgaattaaaaattagtaacttgaaaaatactctttttgcaatgaatataaaagatata
aaacttgattcaaaaacaattaatccaaaaaacttcgctgagcttgttggacaaattaat
aaaataagaaatgatgattttattaaaatgatgtttttaagaactatgcaaaaggctgtt
tattctgaaaataatataggtcatttcggacttgcttcaaaattttattgtcattttact
agtccaataagaagatacccagatttagttattcatagaattattagagaatttattttt
aataaaaatttaaatgaattagaaagctttactaataaaatgtcgctatatagcgatctt
aatacgaaagctgaacaaaaagcggtacaaattgaaagaaatgttaatgatttaaaattt
gctgaatttcttaaaaataggattggaagtgtatttaaagctcaaattcttagtattact
aattttggtttttttgttgaatttgattttaaagcaagtggaatgattcataaatctact
ttagttgatggtgtatatgaagctaatgaaacgctaacaaaattttctaatggaactaaa
acctttattcttggagactttgttaatgtagttgtggttggcgtagatcttgttgaagga
aaaatagattgtgttttagaggatttatatttagcatatcttaacgctaaaaaagcaagc
tttgaacataagaaaaaaacacctaaacacacattgaagtcaaaaggaaaaggataa
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