Mycobacterium canettii CIPT 140070017: BN45_30317
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Entry
BN45_30317 CDS
T02422
Symbol
deaD
Name
(GenBank) Putative cold-shock dead-box protein a homolog DeaD (ATP-dependent RNA helicase DeaD homolog)
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mcz
Mycobacterium canettii CIPT 140070017
Pathway
mcz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN45_30317 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcz03019
]
BN45_30317 (deaD)
03009 Ribosome biogenesis [BR:
mcz03009
]
BN45_30317 (deaD)
Enzymes [BR:
mcz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BN45_30317 (deaD)
Messenger RNA biogenesis [BR:
mcz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BN45_30317 (deaD)
Ribosome biogenesis [BR:
mcz03009
]
Prokaryotic type
rRNA helicases
BN45_30317 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
HEM4
UvrA_inter
P-loop_SecA
AAA_22
B_solenoid_dext
Motif
Other DBs
NCBI-ProteinID:
CCK63391
LinkDB
All DBs
Position
1458336..1460027
Genome browser
AA seq
563 aa
AA seq
DB search
MAFPEYSPAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTG
TGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGS
SYAVQLAGLRRGAQVVVGTPGRVIDHLERATLDLSRVDFLVLDEADEMLTMGFAEDVERI
LSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDA
LTRVLEVEPFEAMIVFVRTRQATEEIAEKLRARGFSAAAINGDVPQAQRERTITALRDGD
IDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELH
LLKAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHD
VPMADIAAALAVQCRGGEAFLMAPDPPLSRRNRDQRRDRPQRPKRRADLTTYRVAVGKRH
KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPHATFKKLAQTRISGVLIDL
RPYRPPDAVRRHNGGKPRRNHVG
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atggccttcccggaatattcgcctgcggcgtccgctgcgacgtttgctgacctgcagatt
catccccgcgtcttgcgggcgatcggcgacgtcggttacgagtcaccgacggctatccag
gcggctacgatcccggcgttgatggcaggctccgacgtggtggggctggcgcagaccggc
accggcaagacggcggcgttcgcgattcccatgctgtccaagatcgacatcaccagcaag
gttccgcaggcgctggtgctggtgcccacccgggagctggctctgcaggtggccgaggcg
ttcggccgctacggtgcctatctgtcgcaactcaacgtgctgccgatctacggcggatcg
tcgtatgccgtgcaactggccggattgagacgcggcgcgcaggtggtggtcggcaccccc
ggtcgtgtgatagaccatctcgaacgggcgaccttggacctgtcgcgggtggactttcta
gtgctcgatgaggccgacgagatgctgaccatgggtttcgccgaagacgttgaacgcatt
ctgtccgagacccccgaatacaagcaggtcgccctgttttccgcgaccatgccgccggcg
atccgcaaactcagcgccaagtatctgcatgatccgttcgaagtcacttgtaaggcgaaa
accgctgtggccgagaatatttcgcagagctacattcaagtagcgcggaagatggacgcg
ctcaccagagtgctcgaagtcgagccgttcgaggcgatgatcgtctttgtccgcaccagg
caggcgaccgaggagattgccgaaaagctgcgtgcccgagggttttccgcggctgccatc
aacggtgacgtcccgcaggcgcagcgggagcggaccatcacggcgctgcgggacggcgac
atcgatatcctggtcgccaccgatgtggcggcgcgcggactcgacgtggagcggatatca
cacgtgcttaactacgacatcccgcacgacaccgagtcctacgtacaccggatcgggcgc
accggcagggccgggcgttcgggagccgcgctgatattcgtctcgccacgggagcttcac
ctgctcaaggcgatcgaaaaggctacgcggcaaacgcttaccgaggcgcaattgcccacc
gtcgaggatgtcaacacccagcgggtggccaagttcgccgattccatcaccaatgcgctg
ggcggtccgggaatcgagctgttccgccgactggtcgaggagtatgaacgcgagcacgat
gtcccgatggctgacatcgccgcggcactggccgtgcagtgccgcggcggtgaggcattc
ctgatggcacccgacccgccgctttcgcggcgcaaccgcgaccagcgtcgggaccgtccg
caaaggcccaagcgtagagcggacttgaccacctaccgcgtcgccgtcggcaagcggcac
aagatcggtccaggcgccatcgtcggcgccatcgccaatgagggtgggttgcaccgcagc
gacttcggtcagatccgcatcgggccagacttctcgctagtagaattgccggcgaagctg
ccccacgcgacgttcaaaaagcttgcacagacccgtatctcgggtgtgctgatcgacctt
cggccataccggccgcccgacgcggtgcgccggcataatggcggcaaaccacggcggaac
cacgtcggatga
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