Microcella daejeonensis: OVN18_06375
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Entry
OVN18_06375 CDS
T09552
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mdb
Microcella daejeonensis
Pathway
mdb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mdb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OVN18_06375 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mdb03021
]
OVN18_06375 (rpoC)
03400 DNA repair and recombination proteins [BR:
mdb03400
]
OVN18_06375 (rpoC)
Enzymes [BR:
mdb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OVN18_06375 (rpoC)
Transcription machinery [BR:
mdb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OVN18_06375 (rpoC)
DNA repair and recombination proteins [BR:
mdb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OVN18_06375 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
WAB82621
UniProt:
A0A9E8MPS8
LinkDB
All DBs
Position
1314114..1317962
Genome browser
AA seq
1282 aa
AA seq
DB search
MLEATTFDELRIGLATADDIRRWSHGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
SCGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMVISVDEEGRHADLPGLENELRLEVKTLEDQRDSMIASRLQKLETE
LGELEAEGAKADQKRKAKDSGEKEMGQLRKSFDEQIAQLERVWEDFRTLKVGDLKPEDSV
FQELQDRYGLYFEAHMGAEAIKKRLEAFDLAAESELLHEQIATGKGQKKIRAIKRLKVVN
SFLQTGNSPAAMVLDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVIKRLIDLGHAQNIKSAKRMVERSR
PQVWDVLEEIIRERPVMLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARILMLASNNILKPSDGRPVTVPTQDMIIGLHHLTTVREGAAGEGR
AFSTIAEATMAMDQGSLHLNAVARIRLFGEKYADGRELKETTLGRALFNELLPADYPFVD
QVADKGTISQIVNDLAERYPKTVVAATLDNVKDAGFYWATRSGVTVALSDVITPPKKKEI
VAEYEKKAAKIQGQFEKGLITNDERRLELVALWSEGTKAVNDEMRANFPVDNTINRMVTS
GARGNWLQVGNIAGMRGLVSNPRGEIIARPIINSYREGLSVAEYFIATHGARKGLADTAL
RTADSGYLTRRLVDVAQDVIIREDDCGTSKGLDFPFAHQVDGAWVRDENVENLVFARTLA
TDAVNEKGEVVAAAGSDVGDVLINDLVAAGVGAIKVRSVLTCESAVGVCAACYGRSLATG
QRVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGSASADDITQGLPRVTELFEARTPKMAS
PIAESAGRITIEDADKQRRVILTPDNGDEEVVYVVSKRSQMLVEDGQHVELGQQIIVGPV
DPKEVLRVKGVRAVQQHLVEGVQGVYRSQGVPIHDKHIEVIVRQMLRKVTVVDHGETDLL
PGELVDRSKYNELNRGALSEGKKTASARQEVMGITKASLATESWLSAASFQETTRVLTQA
AMEGKRDPLLGLKENVIIGKLIPAGTGLAAYRNVSVEATEEAKAERYPNRIFADDSTFSE
ADLSFVDFDSFSSDDFTPGTYN
NT seq
3849 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgaagcaacaactttcgatgagctccggatcggcctcgcgaccgctgacgacatc
cgtcgttggtcgcacggcgaggtcaagaagccggagacgatcaactaccgcaccctgaag
ccggagaaggacggcctgttcggcgagcagatcttcggcccgtcgcgcgactgggagtgc
tcctgcggcaagtacaagcgggtgcgcttcaagggcatcgtctgcgagcgatgcggcgtc
gaggtcacgaagtcgtcggtgcgccgcgagcgcatgggccacatcgagctcgccgcgccc
gtcacgcacatctggtacttcaagggcgttccctcgcgcctgggctacctgctcgacatg
gcgccgaaggacctcgagaaggtcatctacttcgccgcgtacatggtcatctccgtggac
gaggagggtcgccacgccgacctccccggtctcgagaacgagctgcgcctcgaggtcaag
accctcgaggaccagcgcgactcgatgatcgcctcgcgcctgcagaagctcgagaccgag
ctcggcgagctcgaggccgagggcgccaaggccgaccagaagcgcaaggccaaggactcg
ggcgagaaggagatgggtcagctccgcaagtcgttcgacgagcagatcgcccagctcgag
cgcgtgtgggaggacttccgcaccctcaaggtcggcgacctcaagcccgaggactcggtg
ttccaggagctgcaggaccgctacggcctgtacttcgaggcgcacatgggcgccgaggcg
atcaagaagcgcctcgaggccttcgacctggccgccgagagcgagctgctccacgagcag
atcgcgaccggcaagggtcagaagaagatccgtgcgatcaagcgcctcaaggtcgtcaac
tcgttcctgcagaccggcaactcgccggccgccatggtgctcgacgtcgtcccggtcatc
ccgccggagctgcgcccgatggtgcagctggacggtggccgcttcgcgacctccgacctc
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgtcttcgtcgtctgctcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggtcgtcccgtcacgggcaccggcaaccgtgcgctcaag
agcctcagcgacatgctcaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtcgtcggcccgcagctcaagctccaccag
tgcggtctgcccaagctgatggcgctcgagctgttcaagcccttcgtgatcaagcgcctg
atcgacctgggccacgcccagaacatcaagagcgccaagcgcatggtcgagcgctcgcgt
ccgcaggtgtgggacgtgctcgaggagatcatccgcgagcgccccgtcatgctgaaccgc
gcgcccacgcttcaccgtctgggcatccaggcgttcgagccccagctcgtggagggcaag
gccatccagctgcacccgctcgtctgcgcggcgttcaacgccgacttcgacggcgaccag
atggccgtccacctgccgctgtcggtcgaggcccaggcggaggcgcgcatcctgatgctc
gcgtccaacaacatcctgaagccctcggacggccgcccggtcaccgtgcccacgcaggac
atgatcatcggtctgcaccacctcaccaccgtgcgcgagggcgccgccggtgagggccgt
gccttctcgacgatcgccgaggccaccatggccatggaccagggcagcctgcacctcaac
gccgtcgcgcgcatccgcctcttcggcgagaagtacgccgatggtcgcgagctgaaggag
accaccctcgggcgggccctcttcaacgagctgctgccggcggactacccgttcgtcgac
caggtcgccgacaagggcaccatctcgcagatcgtcaacgatctggccgagcggtacccc
aagacggtcgtggccgccacgctcgacaacgtgaaggacgccggcttctactgggcgacc
cgctcgggcgtcaccgtggcgctcagcgacgtcatcaccccgccgaagaagaaggagatc
gtcgccgagtacgagaagaaggcggcgaagatccaggggcagttcgagaagggcctcatc
accaacgatgagcgtcgtctcgagctcgtcgcgctctggagcgagggcaccaaggccgtc
aacgacgagatgcgggccaacttcccggtcgacaacaccatcaaccgcatggtgacgtcg
ggcgcgcgaggcaactggctgcaggtcggaaacatcgcgggtatgcgaggcctcgtctcg
aacccgcgcggtgagatcatcgcccgcccgatcatcaactcgtaccgcgagggcctgtcg
gtcgccgagtacttcatcgccacgcacggcgcccgcaagggtctcgccgacaccgctctg
cgcaccgccgactcgggctacctcacccgtcgtctggtcgacgtcgcgcaggacgtcatc
atccgcgaggacgactgcggcacgagcaagggtctcgacttccccttcgcccaccaggtc
gacggcgcgtgggtgcgcgacgagaacgtggagaacctcgtgttcgcccgcactctcgcc
accgatgccgtcaacgagaagggcgaggtcgtcgcggcggccggctccgacgtcggcgac
gtgctcatcaacgacctcgtcgcggcgggcgtcggcgccatcaaggtgcgctcggtgctc
acgtgcgagtcggcggtcggcgtctgcgccgcctgctacggccgctcgctggccaccggt
cagcgcgtcgacctcggtgaggccgtcggcatcatcgcggcgcagtcgatcggtgagccc
ggaacgcagctcacgatgcgtaccttccacaccggcggttcggcctcggccgacgacatc
acgcagggtctgccccgcgtgaccgagctgttcgaggcgcgcacccccaagatggccagc
cccatcgcggagagcgccggacgcatcaccatcgaggatgcggacaagcagcgccgcgtc
atcctcacccccgacaacggggacgaggaggtcgtgtacgtcgtctcgaagcgctcgcag
atgctcgtcgaggacggccagcacgtcgagctcggtcagcagatcatcgtgggcccggtc
gacccgaaggaggtgctgcgcgtcaagggcgtccgcgccgtgcagcagcacctcgtcgag
ggcgtgcagggcgtgtaccgctcgcagggcgtgccgatccacgacaagcacatcgaggtc
atcgtgcggcagatgctgcgcaaggtcaccgtcgtcgaccacggcgagaccgacctgctg
cccggtgagctcgtcgaccgctcgaagtacaacgagctgaaccgcggcgcgctgtccgag
ggcaagaagaccgcctcggcgcgtcaggaggtcatgggcatcaccaaggcctcgctggcc
accgagtcgtggctgtcggccgcgtccttccaggagacgacccgcgttctcacgcaggcc
gccatggagggcaagcgcgacccgctgctgggtctgaaggagaacgtgatcatcggaaag
ctgatcccggccggtacggggctcgccgcgtaccgcaacgtgtcggtcgaggccaccgag
gaggcgaaggccgagcggtaccccaaccgcatcttcgccgacgactcgaccttctccgag
gccgacctctccttcgtcgacttcgactcgttctcgagcgacgacttcacgccgggcacc
tacaactag
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