Musca domestica (house fly): 101893682
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Entry
101893682 CDS
T03448
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
mde
Musca domestica (house fly)
Pathway
mde03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mde00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101893682
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mde03019
]
101893682
03041 Spliceosome [BR:
mde03041
]
101893682
03009 Ribosome biogenesis [BR:
mde03009
]
101893682
03016 Transfer RNA biogenesis [BR:
mde03016
]
101893682
Enzymes [BR:
mde01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101893682
Messenger RNA biogenesis [BR:
mde03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
101893682
Spliceosome [BR:
mde03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
101893682
Complex C
U4/U6.U5 tri-SnRNP related factors
101893682
Ribosome biogenesis [BR:
mde03009
]
Eukaryotic type
Pre-60S particles
Helicases
101893682
Transfer RNA biogenesis [BR:
mde03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
101893682
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
101893682
NCBI-ProteinID:
XP_005178234
UniProt:
A0A1I8N7V6
LinkDB
All DBs
Position
Unknown
AA seq
1024 aa
AA seq
DB search
MADVDDLFNCFNEQDETNAIEPPIPVVEGKDGEHESNPKTTEKRHLAASEDADNDESNKR
AKMTESILDDICVDALQSRIAVHVIKSPESCTHEVAVYPGQDYIPLQPYTGTPAKEYPFV
LDPFQKEAILCIDNQQSVLVSAHTSAGKTVVAEYAIAKSLNCKQRVIYTTPIKALSNQKY
REFSEEFKDVGLVTGDVTINPSASCLIMTTEILRNMLYRGSEIMREVGWVVFDEIHYMRD
KERGVVWEETLILLPDNVRYVFLSATIPNARQFAEWVCHLHKQPCHVVYTDYRPTPLQHY
IFPAGGDGIHLIVDEKGQFKEDNFKTAMAVLQNAGEAAKGDQKGRKGGIKGVNSGQSNIF
KIVKMIMERNFAPVIIFSFSKKDCEVYAMQMAKLDFNTAEEKKLVDEVFNNALDVLSEED
RQLPQVENVLPLLRRGIGIHHGGLLPILKEIIEILFGEGLLKALFATETFAMGLNMPART
VLFTAPRKFDGKDFRWISSGEYIQMAGRAGRRGLDDKGIVILMIDEKVSPAVGRGIVQGK
ADPINSAFHLTYNMVLNLLRVDEINPEYMLERSFFQFQNQSSIPDLYREVQEKQKDLEKF
KINEEHSVASYHHIRDQLDSLGKQFRTWITKPEYLVPYLQPGRLVKVKNDTEEYDWGIVV
NFKKQTSKTKNPLQAETSVIVDVLLHVSEESSKNDDPKPCKPGQKGNMEVVPVVHKLISQ
ISSLRVYYPNDLRPADNRRSVLKTIKEVKNRFPKGPPLLNPITEMNIKDPEFKNIVDSIA
KFEERLFAHPLHNSPELDRIYALYTQKLKVMEELKTAKAKLKEARSLLQMDELKHRKRIL
RRMEYCTAQDVIEFKGRVACELSSADELLMTEMIFNGVFNDLTTAQAVSLLSCFVCDEKS
SENPTSAEELSGPLRSMQELARRIAKISNECKLELDEESYVDKFKPFLMDVVLAWCKGTS
FLNVCKMTDIFEGSIIRCMRRLEELLRQMCQAAKTIGNTDLENKFSEGIRLLKRDIVFAA
SLYL
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atggccgatgtggacgatttgttcaattgttttaatgaacaggatgaaaccaatgcaata
gaaccaccaattcctgttgttgaaggaaaggacggcgaacatgaatccaacccaaaaact
actgagaagcggcatctcgccgcatctgaagatgcggataatgatgaaagtaacaaacgt
gctaaaatgaccgagtctatattggatgacatctgtgtagatgccttgcaatccagaatt
gccgtacatgtgattaaatccccagaatcttgtacacatgaagttgcagtatatcccggc
caggactatattcccttgcagccgtacactggtacgccagctaaggaatatccattcgtc
ttggatccctttcagaaggaggctattctttgtattgataaccaacaaagtgtgttggtt
tcagcccatacatctgccggtaaaactgttgtagctgagtacgctatcgcaaagtcactg
aactgcaaacaacgtgtaatctatacaacacctattaaagctttgtccaatcagaagtac
cgagaatttagtgaagaatttaaagatgtgggcttggttacgggagatgttacgataaat
ccctcagcttcatgtttaattatgacaactgaaattttgcgtaacatgttgtatcgaggt
agcgaaattatgcgtgaagtcggctgggttgttttcgatgaaatccattatatgcgtgat
aaggaacgtggtgttgtatgggaagaaacattgatattgcttcctgataacgttcgttat
gtattcctttccgctaccattcctaatgcccgacaatttgccgagtgggtgtgccatttg
cacaaacagccatgtcacgtcgtctacactgattatcgtccaacgccattgcagcactat
attttccctgcaggtggagatggtatacatcttattgttgatgaaaagggacaattcaaa
gaagacaactttaaaacggccatggcagttctacaaaatgctggtgaagctgccaaaggt
gaccaaaaaggacgcaaaggcggaattaaaggtgttaactctggccaatcaaacatcttt
aaaattgtaaaaatgataatggagcgcaattttgcacccgtaatcatattctcattcagt
aaaaaggattgcgaagtttatgccatgcaaatggctaaattagattttaatacagccgag
gagaagaagctcgtcgatgaagtctttaataatgccctagacgtactttcagaggaggat
cgtcaattacctcaagttgaaaatgttctacccctactgcgacgtggcattggcatacat
catggtggtctattgcctattttgaaagaaattatagaaattctctttggcgaaggtcta
cttaaagcattatttgctacagaaacttttgctatgggtcttaacatgcctgctagaaca
gtactttttacagcacctagaaagttcgatggcaaagattttcgttggatttcttcgggt
gaatatatccaaatggcaggtcgtgctggtcgtcgtggtttggatgacaaaggtatcgta
attttaatgattgacgaaaaagtatctccagctgttggtagaggaattgttcaaggcaaa
gcagatcccataaattccgctttccatttaacctataatatggttctaaatcttctgaga
gtagatgaaattaatccagaatatatgttggagcggtcattctttcagttccaaaaccaa
tcttctattccagacctatatcgagaggtacaagaaaaacaaaaggatttggaaaagttt
aaaataaacgaagaacatagtgtagcgtcctatcatcatatacgtgatcaactggattcc
ttgggtaaacagtttcgcacatggataacaaagcctgagtatctggtgccatatcttcag
ccaggacgtctagtaaaagtgaaaaatgataccgaagagtatgactggggcatagttgtt
aattttaaaaaacaaacaagtaaaacaaagaaccccttacaagccgaaacatctgtaatt
gtagatgtcctgctacacgtatcagaggagtcttctaaaaacgatgatccaaaaccctgt
aaaccgggtcaaaaaggcaacatggaagtggtgccagttgtccacaaactaatatcacaa
atatcttcattaagagtctactatcccaatgatttgaggccggcagataaccgccgttct
gtactaaagacaataaaagaagtcaaaaaccgttttcccaaaggaccgccgctgctaaat
ccaataacagaaatgaacataaaagatcctgagtttaaaaacatcgtcgactccattgcg
aaatttgaggaaagattgtttgcccatcctctacataattctcccgaattagatcgtata
tatgcactgtatactcaaaaactaaaagttatggaagaattaaaaactgccaaagccaag
cttaaagaagctcgcagccttttgcagatggacgaactgaaacatcgtaaacgtattctc
cgcagaatggaatattgtacagcacaagatgttattgaattcaagggtcgagtggcctgt
gagcttagttcagctgatgaactgctaatgactgaaatgattttcaatggcgtctttaat
gatttgacgacagcacaagcagtttctctgctatcctgttttgtgtgtgatgaaaaatca
tctgaaaatccaacttcagctgaggagctgtcgggacccttacgttctatgcaagagttg
gctcgacgtatagctaaaatttccaatgaatgtaaattagaattggacgaggaatcttat
gtggataaatttaagcctttcctcatggatgttgtacttgcctggtgtaagggtacctcg
tttttaaatgtttgtaaaatgacagatatttttgagggatctataattcgctgcatgcgt
cgcttggaggagcttttgcgtcaaatgtgtcaggcagctaaaacgataggtaatacagac
ttggagaacaaattttccgagggcatacgtttactgaagcgtgatattgtgtttgctgcc
tcattatatttataa
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