Mycolicibacterium diernhoferi: K0O62_08320
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Entry
K0O62_08320 CDS
T07506
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
mdf
Mycolicibacterium diernhoferi
Pathway
mdf03420
Nucleotide excision repair
mdf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mdf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K0O62_08320
03430 Mismatch repair
K0O62_08320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mdf03400
]
K0O62_08320
Enzymes [BR:
mdf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K0O62_08320
DNA repair and recombination proteins [BR:
mdf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K0O62_08320
MMR (mismatch excision repair)
Other MMR factors
K0O62_08320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QYL24255
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All DBs
Position
1739540..1742881
Genome browser
AA seq
1113 aa
AA seq
DB search
MRTLPGTGHLPRPEPGDPDVIVQQQYSPEDLAQALGLFTPTAEQAAVIAAPPGPLVVIAG
AGAGKTETMAARVVWLVANGYARPGEVLGLTFTRKAAGQLLRRVRTRLARLAGTGIGAEV
RGSHIGTDDPPTISTYHAFAGALLRDHGLLLPVEPDTRLIGETELWQLAYRVVCEHPREL
DTDKSPAAVTALVLRLSGALSEHLVDTAALLDTHVELERLIHHLPAGGNQRDRGPAQWLL
KLLATQTERTELVPLIDELHRRMRAEKVMDFGAQMSAAARLAMSAPQVGAQLRQRYRVVL
LDEYQDTGHAQRIALSSLFGGGVDDELALTAVGDPIQSIYGWRGASAANLPRFVTDFPLA
DGSPAPTLELRTSWRNPPEVLHLANATSEAARRRSVNVRELLPRPDAEPGTIRAALLNDV
VAERNWVADQIAARYLENPTPPTAAVLVRRNADAAPMAEALTARGVPVEVVGLAGLLAIP
EVADVVAMLRLVVDPTGGAAAMRVLTGPRLRLGARDITALWQRAVAIDVPVPGEQGTMER
IAAQAAPDADTACLADAICDPGPADRYSEEGYHRIVALGRELTALRAHLTHPLPDLVAEV
RRVLGVDVEVRAARPVANGWGGTEHLDAFGDVVADFTARSDGSPAGLLAYLDAAADVENG
LAPAEVTVSADRVQILTVHAAKGLEWQLVAVPHLSGRVFPSTAMARTWLSDAGDLPPLLR
GDRVTVSEHGVPVLDTSDVNDRKALADKIGDHKDVLAQRRGDEERRLLYVALTRSEDTLL
LTGHHWGATESKPRGPSEFLTELKRVIDDSAEAGQLCGTIDEWAPDPPDGELNPLRGTVV
EAVWPTRSDGGRHADIERGAELVARAAAGAVGAGADPENWAADVDALLAERERVAEPAPV
RLPGQLSVSTLVELGKDPSAAVARLRRRLPARPEPHALLGTAFHEWVQRYFHAERLFDLE
DLPGAVDGEAGRAHAEALADLQASFAASPWASRTPTDVEVPFDMILDPQRGTVVRGRIDA
VFAEPDGGAVVVDWKTGEPPSTPEAQRHAAIQLAVYRLAWAGLQGCRPESVRAAFHYVRS
GVTVMPEDLPGAEELADILTAAAADGAPAQEVR
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atgcggacactgcccggtacgggccatctgccccgcccagaacccggagaccccgacgtg
atcgtccagcagcagtacagccccgaagacctggcccaggcgctcggtctgttcaccccg
accgccgagcaggccgcggtgatcgccgccccgcccggcccgctggtggtcatcgccggc
gccggggccggcaagaccgagaccatggcggcccgggtggtctggctggtcgccaacggc
tacgcccgtcccggcgaggtcctcggcctgacgttcacccgcaaggccgccgggcagctg
ctgcgccgggtacgcacccggctggcccggctggccggcaccgggatcggcgccgaggtc
cgcggctcgcacatcggtactgacgacccgcccaccatcagcacctaccacgccttcgcc
ggtgcactgctgcgcgatcacgggttgctgctgccggtggagccggacacccggctgatc
ggtgagaccgagttgtggcagctggcctaccgcgtggtgtgcgagcacccgcgcgagctg
gacaccgacaaatccccggccgcggtcaccgcgctggtgctccggctctccggtgcgctg
tccgagcatctggtcgacacggcggcgctgctggacacccacgtcgagctggaacggctc
atccatcacctgcccgccggcggcaaccagcgtgaccgcggtcccgcccagtggctgctc
aaactgctggccacccagaccgaacgcaccgaactggtgccgctcatcgacgagctgcac
cgccgcatgcgcgcggagaaggtgatggacttcggcgcccagatgtcggcggcggcccgg
ctggcgatgtccgcgccccaggtcggcgcccagctgcggcagcgctaccgggtggtgctg
ctcgacgagtaccaggacaccgggcacgcccagcgaatcgcgttgtcctcgttgttcggc
ggcggggtcgacgacgagctggcgttgaccgcggtcggtgacccgatccagtcgatctac
ggctggcgcggcgcctcggcggccaacctgccgcggttcgtcaccgatttcccgctcgcc
gacggcagccccgccccgaccctggaactgcgcaccagttggcgtaacccgcccgaggtg
ctgcacctggcgaacgcgacgtctgaggcggcccgcaggcgctcggtgaatgtgcgggaa
ctgctgccccgcccggacgccgagccgggcaccatccgcgcagcgctgctgaacgatgtt
gtagccgagcgtaattgggtggccgaccagatcgccgcgcgctacctggagaacccgact
ccgcccacggcggcggtcctggtccggcgcaacgccgacgccgcgccgatggcggaggcg
ctgaccgcgcgcggggtgccggtggaggtggtcggactggccgggctgctggcgatcccg
gaggtcgccgacgtggtcgccatgctgcggctggtggtcgacccgaccggtggggcggcg
gccatgcgggtgctgaccggtccgcggctgcgcctgggcgcccgcgacatcacggcgctg
tggcagcgcgccgtggccatcgacgtgccggtgcccggcgagcaggggacgatggaacgc
atcgcggcccaggccgccccggatgcggacaccgcctgcctggccgacgcgatctgcgat
ccgggtccggccgaccggtactccgaggagggctatcaccgcatcgtcgcgctgggtcgc
gaattgaccgcgctgcgtgcccatctcacgcatccgctgcccgatctggtcgccgaggtc
cggcgggtgctcggcgtcgacgtggaggtccgcgcggcgcgcccggtcgccaacggctgg
ggcggaaccgaacatctggatgccttcggtgacgtggtggccgacttcacggcccgctcc
gacggctcaccggccgggctgctggcctacctggatgccgccgcggacgtggagaacggt
ctggctccggccgaggtgacggtgtcggccgaccgggtgcagatcctcacggtgcacgcc
gccaaggggctggaatggcaactggtggcggtaccgcacctgagcgggcgggtgtttccg
tccaccgcgatggcgcggacctggctctcggatgccggcgacctgccgccgctgctgcgc
ggggaccgggtgacggtctccgagcacggcgtcccggtgctggacacctccgacgtcaac
gaccgaaaggcattggccgacaagatcggtgaccacaaggatgtgctcgcccagcgtcgc
ggcgacgaggaacgccggctgctgtacgtggcactgacccgctccgaggacaccctgctg
ctgaccgggcaccactggggcgccaccgaatccaaaccccgcggaccctcggagttcctc
accgaactcaagcgggtcatcgacgactccgccgaggccggacaactctgcggcaccatc
gacgaatgggcgcccgatccgcccgacggggagctgaacccgttgcggggcaccgtggtc
gaggcggtctggccgacccggtccgacggcggtcggcacgccgacatcgaacgcggcgcc
gaactggtggcgcgggcggcggccggcgccgtcggtgccggtgcggacccggagaactgg
gcggccgacgtcgacgcactgctcgccgaacgggaacgggtcgccgaaccggcgccggtc
cggctgcccgggcagctctcggtgagcacgctggtcgaactgggcaaggatccgtcggcg
gcggtcgcccggctgcgccgccggctgccggcgcgtcccgaaccacatgccttgttgggc
accgcgttccacgaatgggtgcagcgctacttccacgccgagcggctgtttgacctggag
gatctgcccggtgccgtcgacggtgaggccggccgcgcgcacgccgaggcgttggccgac
ctgcaggcgtcgttcgccgcctcgccgtgggcgtcgcgcaccccgaccgatgtcgaggtg
cccttcgacatgatcctcgatccgcaacgcggcacggtggtgcgcggacgcatcgacgcc
gtcttcgccgaaccggacggcggcgcggtggtggtcgactggaagaccggggagccgccg
agcaccccggaagcccagcgccacgcggccattcagctcgcggtgtaccggctggcgtgg
gctggcctgcagggctgccgacccgaatcggtgcgggccgcgttccactacgtgcgcagc
ggggtgaccgtcatgcccgaggacctgcccggcgccgaggaactggccgacatcctgacc
gccgccgcggcagacggcgcgcccgctcaggaggtgcgatag
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