Mycolicibacterium diernhoferi: K0O62_14250
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Entry
K0O62_14250 CDS
T07506
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
mdf
Mycolicibacterium diernhoferi
Pathway
mdf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mdf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K0O62_14250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mdf03400
]
K0O62_14250
DNA repair and recombination proteins [BR:
mdf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K0O62_14250
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
K0O62_14250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
ABC_tran
AAA_21
AAA_29
AAA_16
DnaJ_CXXCXGXG
DUF4350
Anti-TRAP
nSTAND1
AAA_25
RsgA_GTPase
NACHT
DUF6510
Viral_helicase1
NTPase_1
DUF5351
MobB
Motif
Other DBs
NCBI-ProteinID:
QYL20289
LinkDB
All DBs
Position
3025580..3028078
Genome browser
AA seq
832 aa
AA seq
DB search
MSDEPDTYVRVYASRVHNLRGVDVAAPRDAFVVFTGVSGSGKSSLAFGTIYAEAQRRYFE
SVAPYARRLLLPNDAPKVDDITGLPPAVALQQRRGATSSRSTVGTVTTLSNLLRMLMSRA
GTYPPGATERLDSDAFSSNTVVGACPDCHGLGRIHRVTEQTLVHDPTLTIREGAVSAWPG
AWQGQNLRDILITLGYDIDKPWRKLPKRQRDWILFTDEQPTVEIDPSRHPVTAEYYYNGT
FSSAERHIRHTLANSQSAMMRRRALQYVDSIDCPACGGAGLRPEALAVTFAGHNIAELVA
LPLQMLADVLEPAATRTEFDAAYESTESGEHTEVATMIAADLVARIAVLVDLGLGYLSLN
RRTPSVSPGELQRLRLASQLRAGLFGVLYVLDEPSAGLHPADAETLLEVLDRLRRAGNSL
FVVEHDMDVVRRADWIVDVGPGAGEQGGDVLYSGPVAGLADVERSITRRYLFDARPTSRT
TTRTPTGTLSLRGIAFHNLRGVDVDIPLGTFVAVTGVSGSGKSTLVCKVLGDVIARELGI
SEPVEDSGDGDTELLDIDQDASIGVRVDGAEVIDRLVTVDQKPIGRTPRSNLATYTGLFD
AVRKAFADTEEARRRGWSAGRFSFNVAAGRCDTCQGEGFVAVELLFLPGTYARCPACGGA
RYSDETLEVTYRDRTIADVLAMTVDEAGEFLADLPSAARSLATLRDVGLGYLRLGQPATE
LSGGEAQRIKLATELQRAKRGHTVYVLDEPTTGLHPADVELLEAQLHRLVDAGNTVVVAE
HDMSVVAGADHVIDLGPGGGDAGGTVVVAGTPRRVAAHKTSRTAPYLAAALT
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgacgaaccagacacctacgtccgggtgtacgcctcccgcgtgcacaatctgcgt
ggcgtggacgtcgccgccccacgcgacgcgttcgtggtgttcaccggcgtatccggatcg
ggcaagtcctcgctggcattcggcaccatctacgccgaggcacagcgacgctacttcgaa
tccgtggcgccgtatgcccgccggttgctgctgcccaacgacgcgcccaaggtcgacgac
atcaccggtctaccgcccgcggtggcgttgcagcagcgacgcggggccaccagcagccgg
tccaccgtcgggaccgtcaccaccctgtccaacctgctgcggatgctgatgtcgcgggcc
gggacctatccgcccggcgccaccgaacgcctggactccgatgcgttctcctcgaacacc
gtcgtcggcgcatgcccggactgccacggcctgggccgtatccaccgggtcaccgaacag
accttggtgcacgacccgacgctgaccatccgcgagggcgcggtctcggcctggccgggc
gcctggcagggccagaacctgcgcgacatcctcatcacactcggctacgacatcgacaaa
ccgtggcgcaaactgcccaagcgccaacgtgattggatcctgttcaccgacgagcagccc
accgtcgagatcgacccgagccggcatccggtcactgcggagtactactacaacggcacc
ttctccagcgccgaacgccacatccggcacaccttggcgaactcgcagagcgcgatgatg
cgacgccgtgccctgcagtacgtggacagcatcgactgcccggcgtgcggcggcgccggc
ctgcggcccgaggcactcgcggtgaccttcgccggccacaacatcgccgaactggtggcg
ctgccactacagatgctcgccgatgtactcgaacccgccgccaccagaaccgaattcgac
gccgcctacgagtccaccgaatccggcgagcacaccgaggtggccaccatgatcgccgcc
gatctggtggcccggatcgcggtgctggtcgacctcgggctgggctacctgagcctgaat
cggcgcaccccgtcggtgtcgcccggtgaactgcaacgcctgcggctggccagccagctg
cgcgccgggctgttcggcgtgctctacgtcctcgacgagccgtcggcgggtctgcacccg
gccgacgccgagaccctgctcgaggtgctggaccggctgcggcgcgccgggaactcactg
ttcgtcgtcgaacacgatatggacgtggtgcgccgcgcggactggatcgtcgacgtcggc
cccggtgccggggagcagggcggtgacgtgctctacagcggcccggtggccgggctggcc
gacgtcgagcgctcgatcacccggcgctacctgttcgatgcccggccgacgtcgagaacc
acgacccggacgccgacaggcacgctgagcctgcgcggcatcgccttccacaacctgcgc
ggtgtcgacgtggacatcccgttgggcacgttcgtcgcggtcaccggggtgtccggctcg
ggcaagtcgacgctggtctgcaaggtgctcggcgacgtgatcgcccgcgaactgggcatc
tccgagccggtcgaggacagcggcgacggtgacaccgaactactcgacatcgaccaggac
gccagtatcggggtgcgcgtggacggggccgaggtgatcgaccgactggtcaccgtggac
cagaagcccatcggacggacaccgcggtccaacctggcgacctataccgggctgttcgac
gcggtgcgaaaagcgttcgccgacaccgaggaagcccgtcggcgcggctggagcgccggg
cggttctcgttcaacgtggccgccggccggtgcgacacgtgccagggcgagggtttcgtc
gcggtggagctgctgttcctgcccggtacctatgccaggtgcccggcgtgcggcggcgcc
cgctattcggacgagacactggaggtcacctaccgggaccgcaccatcgccgacgtgctg
gccatgaccgtggacgaggccggcgagttcctggccgatctacccagcgcggcaaggagt
ctggccaccctgcgcgacgtcgggctggggtatctgcggctcgggcaaccggccaccgaa
ctgtccggcggcgaggcgcaacgcatcaaactggccaccgaactgcagcgcgccaagcgc
gggcacacggtgtatgtgctcgacgagcccaccaccggcctgcaccccgccgacgtggag
ctgttggaggcccagctacaccgcctggtcgacgccgggaacaccgtcgtggtggccgaa
cacgatatgtccgtggtggccggggccgaccacgtcatcgacctgggcccagggggtggg
gacgcgggtggcacggtggtggtggcgggcaccccacggcgggtggccgcgcacaagacc
agccgcaccgcaccgtatctggccgcggccctgacctga
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