Mycolicibacterium diernhoferi: K0O62_21585
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Entry
K0O62_21585 CDS
T07506
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mdf
Mycolicibacterium diernhoferi
Pathway
mdf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mdf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K0O62_21585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdf03019
]
K0O62_21585
03009 Ribosome biogenesis [BR:
mdf03009
]
K0O62_21585
Enzymes [BR:
mdf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K0O62_21585
Messenger RNA biogenesis [BR:
mdf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K0O62_21585
Ribosome biogenesis [BR:
mdf03009
]
Prokaryotic type
rRNA helicases
K0O62_21585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UvrA_inter
CMS1
HEM4
adh_short
Surface-like_ins_dom
Flavi_DEAD
Cas3-like_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QYL21570
LinkDB
All DBs
Position
complement(4570417..4572096)
Genome browser
AA seq
559 aa
AA seq
DB search
MTLPDESTPAAELTFADLQIHPAVLQAVTEVGYESPSAIQAKTIPAILNGSDVVGLAQTG
TGKTAAFAIPILSKIDTTSKTTQALVLAPTRELALQVAEAFGRYGSHLNVNVLPIYGGSS
YGPQLSGLRRGAQVVVGTPGRVIDHLEKGSLDLSHLDYLVLDEADEMLQMGFAEDVERIL
ADTPEYKQVALFSATMPPAIKKITAKYLHDPVEVMVKSKTQTAENITQRYFQVSYPRKMD
ALTRLLEVEQGDAMIVFVRTKQATEEVAEKLRARGFAAAAINGDIAQAQRERTIAQLKDG
SIDILVATDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTAFLFVTPRER
HLLSSIERVTRQKLVESQLPSVDDVNAQRVEKFRDSISEALNAPGVELFRRLIEDYERDN
DVPLADIAAALAVQSRNGEAFLMTEPPPEKRKERTERTREDRPPNKKHSTRSDLATYRIA
VGKRHKVAPGAIVGAIANEGGLNRSDFGHIDIRVDHSLVELPANLPPKVYKALEKTRIQG
ILINLQPDRGGQKPRRKDS
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgacgttgcctgatgaatccacccccgctgccgagctgaccttcgctgacctgcaaatt
cacccggcggtgctacaagccgtcaccgaggtcggctatgagtcaccgtcggcgatccag
gcgaagaccatcccggccatcctgaacggctccgatgtggtgggcctcgcccagaccgga
accggcaagaccgcggctttcgccatcccgatcctgtccaagatcgacaccaccagcaag
accacccaggccctggtgctggcgcccacccgcgagctcgcgctgcaggtcgccgaggcg
ttcggccgctacgggtcgcacctcaatgtcaacgtgctgccgatctacggcggctcgtcc
tacggcccgcagctgtccggcctgcgccgcggcgcacaggtggtcgtcgggacccccggc
cgggtgatcgatcacctggagaagggcagcctggacctctcgcacctggactacctggtg
ctcgacgaggccgacgagatgctgcagatgggcttcgccgaggatgtggagcgcatcctc
gccgacacccccgaatacaagcaggtggcgctgttctcggcgaccatgccgccggccatc
aagaagatcaccgccaagtacctgcacgatcccgtcgaggtcatggtcaagtcgaagacc
cagacggccgagaacatcacccagcgttatttccaggtgtcctacccgcggaagatggat
gcgctgacccggctgctggaggtcgagcagggcgacgcgatgatcgtgttcgtccggacc
aagcaggccaccgaggaggtcgccgagaagctgcgcgcccgcggattcgcggccgcggcg
atcaacggcgacatcgcccaggcccagcgtgagcgcaccatcgcccagctcaaggacggg
tcgatcgacatcctcgtcgccaccgacgtcgccgcccgcggcctggacgtcgagcggatc
tcacacgtggtgaacttcgacatcccgcacgatccggagtcctatgtgcaccgcatcggt
cgcaccggccgcgcgggtcgctcgggcaccgcgttcctgttcgtcacgccgcgagaacgc
cacctgctcagctcgatcgaacgggtcacccggcagaagctcgtcgagtcgcagctgcct
tcggtcgacgatgtgaacgcccagcgggtggagaagttccgggattcgatcagtgaggcg
ctcaatgcgccgggtgtggaactgttccgccggctcatcgaggactacgaacgcgacaac
gacgtgccgctggccgatatcgcggcggcgctggccgtgcagtcgcgcaacggtgaggcc
ttcctgatgaccgagccgccgccggagaagcgcaaggagcgcaccgagcggacccgcgag
gaccggcccccgaacaagaagcacagcacccgcagcgatctggcgacctaccgcatcgcc
gtgggcaagcggcacaaggtggcccccggcgcgatcgtcggcgccatcgccaacgagggc
ggcctcaaccgcagcgacttcgggcacatcgacatccgggtcgatcactcgttggtggag
ttgcccgcgaatctgccccccaaggtctacaaggccctcgaaaagacccgtatccagggc
atcctgatcaacctgcagccggatcgcggcggacagaagccccgccgcaaggactcgtga
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