Mycolicibacterium diernhoferi: K0O62_23925
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Entry
K0O62_23925 CDS
T07506
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mdf
Mycolicibacterium diernhoferi
Pathway
mdf03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mdf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
K0O62_23925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mdf03400
]
K0O62_23925
Enzymes [BR:
mdf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
K0O62_23925
DNA repair and recombination proteins [BR:
mdf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
K0O62_23925
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QYL21990
LinkDB
All DBs
Position
complement(5063765..5066056)
Genome browser
AA seq
763 aa
AA seq
DB search
MVERFGRVKLTNPDKVLYPAVGTTKAEVFDYYLAVADAMLPHIAGRPVTRKRWPNGVEQP
EFFEKQLASSAPDWLDRGSVTHRSGTTTYPVIDTAEGLAWIAQQASLEVHVPQWRFSSGG
RSGAGEIFGDPGPATRIVFDLDPGEDVTFRQLCEVAHEVKGYVEDIGLTAYPLTSGSKGL
HLYVPLAEPISSQGASVLAKRIALALEKAMPKQVTATMTKSVRTGKVFLDWSQNSAAKTT
IAPYSMRGRHEPTVAAPRTWEEIADPDLRHLRFDEVLERVERDGDLLAGLDEPLPESDRL
TTYRSMRDAAKTPEPVPRAAPAVGQDNTFVIQEHHARRLHYDFRLERNGVLVSWAIPKNL
PETTAVNHLAVHTEDHPLEYASFEGSIPKGEYGGGEVYIWDSGTYEAEKFRDNPPDGPDK
GGEVIVTLRGAKVQGRYALIQTGGKNWLAHRMKDQAQPSAKDLAPMLATHGSVAKLNSVT
WAFEGKWDGYRLLVDADHGALQLRTRSGRDVTQEYPQLRALAADLADHHVILDGEVVALD
DGVPSFGAMQNRASGGNIEFWAFDILYLDGRSLLRAKYTDRRRILETLESVGNLIVPAQL
PGDGAAALEYAAERRWEGVVAKKRDSTYQPGRRSQSWIKDKLWLSQEVVIGGWRAGEGGR
TSGIGALVVGVPGPDGLDFAGRVGTGFTEKMLKDLRATLKPLETDESPFAKRLSGPDAKG
VTFVRPELVGEVRYSERTSDGRLRQPSWRGLRPDKTPDEVVWE
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
gtggtggagcgcttcggccgggtcaaactgaccaatccggacaaagtgctctatccggct
gtcggcaccaccaaggccgaggtgttcgactactacctggccgtcgccgacgccatgctg
ccacacatcgccgggcgcccggtcacccgcaaacggtggcccaacggcgtcgaacaaccc
gagttcttcgagaaacaactcgcctcctcggcgccggactggctggaccgcggctcggtg
acccaccggtcgggcaccaccacctaccccgtcatcgacaccgccgaggggctggcctgg
atcgcccagcaggcctcactggaagtgcatgtcccgcagtggcggttctcatcgggcggg
cgcagcggggcaggtgagatttttggtgatcccgggccggccacccgcatcgtgttcgat
ctggaccccggcgaggacgtcacgttccgtcagctctgcgaggtcgcccacgaggtgaag
gggtacgtcgaggacatcggcctgacggcgtatccgttgaccagcggcagcaaggggctg
cacctgtacgtgccgctggccgagccgatcagttcgcagggcgcctcggtgctggccaaa
cgcattgcgctggcgctggagaaggcgatgcccaagcaggtcaccgccaccatgaccaag
agcgtgcggacgggcaaggtgttcctggactggagccagaacagcgccgccaagaccacc
atcgcgccgtactcgatgcgcggccgccacgagccgacggtggcggcgccgcggacctgg
gaggagatcgccgaccccgacctgcggcacctgcgtttcgacgaggtgctggaacgggtt
gagcgcgacggtgatctgctggcggggctcgacgagccactgccggaatccgaccggctg
accacttaccgcagtatgcgcgacgccgccaagaccccggagccggtgccgagggccgcg
ccggcggtcgggcaggacaacacgttcgtcatccaggaacaccatgcccggcgattgcac
tacgacttccggttggaacgcaacggggtgttggtgtcctgggcgatcccgaagaacctg
cccgagaccacggcggtcaaccatctggccgtgcacaccgaggaccacccgctggagtat
gcctcgttcgagggttcgatccccaagggtgagtacggcggcggtgaggtgtacatctgg
gattccggcacctacgaggccgagaagttccgggacaacccgccggacggcccggacaag
ggtggcgaggtgatcgtcacgctgcgcggggccaaggtgcagggtcgttacgcgctgatc
cagaccggcgggaagaactggctggcgcaccggatgaaggaccaggcgcagccgagcgcc
aaagacctcgcaccgatgctggccacccacggttcggtggcgaagttgaactcggtgacg
tgggcgttcgaggggaagtgggacggctaccggctgctggtcgacgcggatcacggtgcg
ctgcaactgcgtacgcgcagcgggcgggacgtgacccaggagtacccgcaactgagggcg
ttggccgccgatctggccgaccatcacgtcattctcgacggggaggtggtcgcactcgac
gacggggtgcccagcttcggggcgatgcagaaccgggcttcgggcgggaacatcgagttc
tgggcgttcgacatcctgtatctcgacggccgatccctgttgcgcgccaagtacaccgat
cgtcgacggatcctggagacactggaatcggtggggaacctgatcgtgccggcgcagttg
cccggtgacggtgccgcggcgttggagtatgcggccgagcggcggtgggagggtgtggtc
gccaagaagcgggactccacctatcaacccggccggcgctcgcagtcctggatcaaggac
aagctgtggctcagccaggaggtggtgatcggcgggtggcgggccggtgaaggtggacgc
accagcgggatcggggccctggtggtgggtgtgccgggtccggacggcctcgacttcgcc
ggtcgggtgggtaccggattcaccgagaagatgctcaaagatctacgcgccacgctgaag
ccgctggaaaccgacgaatcaccgttcgccaagcggctttccggcccggacgccaagggc
gtgacgttcgtgcgcccggagctggtgggggaggtgcgctacagcgagcgcacctcggac
ggccggttgcggcagccgagctggcgggggctgcgtccggacaagactccggacgaggtg
gtgtgggagtag
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