Metabacillus dongyingensis: K8L98_00360
Help
Entry
K8L98_00360 CDS
T07997
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mdg
Metabacillus dongyingensis
Pathway
mdg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mdg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K8L98_00360 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mdg03400
]
K8L98_00360 (mfd)
Enzymes [BR:
mdg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K8L98_00360 (mfd)
DNA repair and recombination proteins [BR:
mdg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K8L98_00360 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
UAL52382
LinkDB
All DBs
Position
66718..70248
Genome browser
AA seq
1176 aa
AA seq
DB search
MQSLQHYFYDNDDFQTIIEGVHGGLKEQLVAGLSGSARSVFTSSLYQHSKKPILMITHNL
FQAQKIYEDLANLLGDQVLLYPVNELIASELAVASPELKAQRMEVLNQLSQNKRRIIVAP
VAALRRFLPPKEAWLENQFHLKLGQDLDLEKTMASLITMGYERAGMVSAPGEFSLRGGIM
DIYPLTEEYPIRIELFDTEIDSIRSFNSEDQRSIAKLKEVHIGPAEELVVDQSRITACIQ
KLESGLAYSLKRLKDEKQKEILAENIGYELEQLRNGQFNQEMFKYLSYFYAKPASLLDYF
HEQTIVVMDEVSRIQEMYENLEKEEADWYTSLLEHGKIVNDVQMSHKYTDVLTKTKHPLV
YLSLFLRHVPHTSPQNILNVSCKQMQNFHGQMNVLKSEIDRWKKAKFSVVFLGATEERVK
KLEGVLADYEITAAFLKKNEAPKLGNLYIMEGDLQTGFELPLQKLAVITEEELFKKRVKK
QPRSQKISNAERIKSYSELQVGDHVVHVNHGIGKYLGIETLVINGVHKDYLHIRYHGSDK
LYVPVEQIDLIQKYVGSEGKEPKIYKLGGSDWKRVKKKVESSVQDIADDLIKLYAEREAS
VGYGFSPDGEMQREFESIFPYQETEDQLRSIHEIKLDMERERPMDRLLCGDVGYGKTEVA
IRAAFKAIADGKQVALLVPTTILAQQHFETVRERFQDYPINIGLLSRFRSRKEMNETVKG
LKSGTVDMVIGTHRLLSKDVTYKELGLLIIDEEQRFGVTHKEKIKQMKANIDVLTLTATP
IPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGGFVREAIERELARGGQVYFLYNR
VDDIDRKADEISMLVPDARVTYAHGKMSENELESTMLNFLDGQFDVLVSTTIIETGVDIP
NVNTLIVHDADKMGLSQLYQLRGRVGRSSRIAYAYFTYRKDKVLTEVAEKRLQAIKEFTE
LGSGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERREDGPKEKPFQV
EIDLEVDAYLPEEYISDGRQKIDIYKRFRAVASLADLEELQEEIVDRFGDYPAEVGYLLQ
IAKLKVFAVQEKVDMIKQEKDSVALFVSEDASRLVDGQKLFDLSNKYGRAVGLGMDGKRL
KITIQTKGVIADKWLKIASELLNGLGSVKKVEISAN
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
ttgcaaagtttgcagcattacttttatgataatgacgattttcagacgattattgaagga
gttcatggaggcctgaaagaacagctcgtagcaggcttatccggctctgcaaggtctgtc
tttacatcttcactttatcagcattcaaaaaaaccgattttaatgattacccataatctg
tttcaggcccagaagatttatgaagacctggccaaccttctcggggatcaggtccttctt
tatcctgtaaacgaattaattgcttctgagcttgctgtagcaagccctgagttaaaagca
cagagaatggaagtcctgaatcaattatctcaaaataaaagaagaattattgttgctccg
gtcgcagcgctcagaaggttcttgccgccgaaggaagcttggcttgaaaatcagtttcat
ttaaagcttgggcaagatttagatcttgaaaaaacaatggcatctttaattacgatgggg
tatgaaagagccggaatggtttctgctccaggagagttcagtttaagaggcgggattatg
gatatctatcctcttaccgaagaatacccgattcggattgaattgtttgatacagagatt
gattcgatccgctcttttaacagcgaagatcagcgttcaattgctaagcttaaagaagtt
catatcggtcctgcagaggaactcgttgttgatcaaagcagaatcactgcatgtatacag
aagctggaaagtggtttagcctacagtttgaagcggctgaaagatgaaaaacaaaaagag
attctggcagagaatatcggctatgagcttgaacaattaagaaacggccaatttaatcag
gaaatgtttaaatatctttcatacttttatgccaagcctgctagtttactagattatttt
catgagcagaccattgtcgtcatggatgaagtcagcagaattcaggaaatgtacgaaaat
cttgaaaaagaagaggctgactggtatacgagcctgcttgagcacggaaaaattgtgaat
gatgttcagatgtcacataaatatacagatgttttaacaaaaacaaagcatccgcttgtc
tatctatccttatttttgcgtcatgtcccgcatacaagtcctcagaatatcttaaatgtc
tcatgtaagcagatgcagaattttcatgggcaaatgaatgtgctgaaaagtgaaattgat
agatggaaaaaagcaaaattctctgttgtatttcttggtgctacagaagagagagtcaaa
aagcttgagggtgtgctggctgattatgagattacagctgcttttttgaaaaaaaatgaa
gcgccaaagcttggcaatctctacattatggaaggcgatcttcaaacggggtttgaactc
ccgctgcaaaagcttgccgttattacagaggaagaactttttaaaaagagagtgaaaaaa
cagccaagaagccagaaaatatcaaatgcagaaagaatcaagagctattcggaacttcaa
gtcggagatcatgttgttcatgtgaatcacgggatcggtaaatacttgggcatagaaacc
cttgtaattaatggcgtgcacaaagattatctgcatatccgctatcatggcagcgacaaa
ttgtatgtcccagttgaacaaattgatctgatccagaagtatgtaggttcagagggaaaa
gagccaaaaatctacaagcttggcggcagtgactggaagcgggttaagaagaaagttgaa
tcctctgtccaggatatagcagatgacttaatcaagctttatgccgagagggaagcaagt
gtaggctatgggttttcgcctgatggcgagatgcagcgcgagtttgaatcgatttttcca
taccaggaaacagaggatcagctccgctccattcatgaaatcaagcttgatatggaaaga
gaacggccgatggaccggcttctttgcggtgatgtgggctatggtaaaacagaggttgca
atccgtgctgcatttaaagctattgctgatggtaagcaggtcgcccttctggttccaacg
accatccttgcacagcagcattttgaaacagtccgggagaggtttcaggattacccgatt
aatataggcttgctaagccgctttagatcaagaaaagaaatgaacgaaacagtaaaaggt
ctgaaaagcggcactgttgacatggtaatagggacacaccgactattatctaaagatgtt
acgtacaaagagctgggcctattaattattgatgaagagcagcgctttggtgttacacat
aaagagaaaattaaacaaatgaaggcaaacattgatgtcctgactttaacagctacacca
ataccgcgtacgctccatatgtcaatgcttggagtccgcgatttgtctgttatcgaaaca
ccgcctgagaaccggttccctgtacagacatatgtcgtcgaatataatggcgggttcgtc
cgtgaagcaattgaaagagaacttgcaaggggcggccaagtctactttttatacaaccgc
gtagacgatatagaccgtaaagcagatgaaatatctatgcttgtacctgatgcacgtgtg
acatatgctcatggaaaaatgtccgagaatgaactggaatcaacgatgcttaatttcctt
gatgggcaatttgatgtgcttgtcagtacgacaatcattgaaactggggttgatattcca
aatgtaaatacgctgatcgtccatgatgccgataagatgggtctctctcagctctatcag
ctaagaggccgtgtcggacgttccagccgaattgcgtatgcttactttacgtaccgaaaa
gacaaagtgctgactgaagtagcggaaaaacgtctgcaggcaattaaagagtttacagaa
ctgggttcgggcttcaaaattgcgatgcgcgacctttcgattcgcggagcagggaatctg
cttggtgcacagcagcacggattcatcgattctgttggttttgatctttattctcaaatg
ctgaaagaagcaattgaggaacgaagagaagacggcccgaaagagaaaccgttccaggtt
gaaattgatcttgaagtggatgcttacttgccggaagagtacatttcagacggcagacag
aagattgacatctataaacgattcagagctgttgcttctttagctgatttagaagagctg
caggaagaaattgtcgacagattcggggattatcctgcagaggttggctatcttctgcag
attgcaaaacttaaagtttttgctgtccaggagaaggtagatatgatcaagcaggaaaaa
gactcagtagcccttttcgtcagtgaggatgcgagcaggctggtcgacggacagaagctg
tttgatctgagcaacaaatacggcagagccgtcggtctgggaatggacggaaaaaggctt
aaaatcaccatccagacaaaaggagttattgctgataaatggctgaagattgcatcagag
cttttaaatggtttaggctcggtaaaaaaagtagagatttctgctaactga
DBGET
integrated database retrieval system
