Metabacillus dongyingensis: K8L98_01960
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Entry
K8L98_01960 CDS
T07997
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
mdg
Metabacillus dongyingensis
Brite
KEGG Orthology (KO) [BR:
mdg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mdg03009
]
K8L98_01960 (rlmD)
Enzymes [BR:
mdg01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
K8L98_01960 (rlmD)
Ribosome biogenesis [BR:
mdg03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
K8L98_01960 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
PrmA
MTS
TRM5-TYW2_MTfase
Cons_hypoth95
Methyltransf_15
Methyltransf_11
N6_Mtase
RrnaAD
Methyltransf_4
TRM
Methyltransf_23
Methyltransf_12
PCMT
UPF0020
N6_N4_Mtase
TPMT
Motif
Other DBs
NCBI-ProteinID:
UAL52634
LinkDB
All DBs
Position
372569..373954
Genome browser
AA seq
461 aa
AA seq
DB search
MTKAIAPVQKNEYYDVTFEDLTHDGSGVAKIEGYPIFVPNALPNEKGQIKVTKINKGYAF
GRLVELHNESSERTDAPCPIYKQCGGCQLQHLSYQGQLDFKQKQVKEVLTRIGKLNLDNV
TVHPTLGMENPWNYRNKAQVPVGEREGGLIAGFYQQRSHEIIDMEQCLIQQSENDEVVAA
IKAIATRHGIRAYDEKKNKGWLRHIMVRYGIVTKEMMVVFITRTPDFPNKKAIIDDITSQ
FPAVKSIVQNINPKRTNVIFGDQTTVLWGEEYIYDYIGDIKFAISARSFYQVNPEQTRVL
YDKALEYADLSGEESVIDAYCGIGTISLFLAQKAKKVFGVEIVPEAIEDAKRNAALNGIE
NAEFAVGEAEVVIPKWYEEGNTADVIVVDPPRKGCDEALLQTILDMKPKKVVYVSCNPAT
LARDLRVLEDGGYATVEVQPVDMFPHTTHVECCSLLVSKEK
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaggcaatagcgcctgtacaaaaaaatgaatattacgacgtgacctttgaagac
ctgacacacgacggatcaggcgttgccaagatcgaaggctacccaattttcgttcctaac
gcccttccaaacgaaaaaggccaaatcaaagtcacgaaaataaataaaggctatgccttc
ggacgccttgtcgagctgcacaatgaaagctcagaacgcaccgatgccccgtgcccgatc
tataaacaatgcggcggctgccagcttcagcacctaagctaccagggccagcttgacttc
aaacaaaagcaagttaaagaagtgctcacaagaatcggcaagctcaacctggacaacgtt
accgttcacccgacattaggcatggaaaatccgtggaactaccgtaataaggcccaagtt
ccagtcggagaacgcgaaggcggactaatagccggcttctaccagcagcgctctcacgaa
atcatcgacatggagcaatgcctcatccagcaaagcgaaaacgatgaagtcgtcgcagcc
atcaaagccatcgccacccgtcacggcatccgcgcctacgacgaaaagaaaaacaaaggc
tggctccgccacatcatggtccgctacggcatcgttacaaaagaaatgatggtcgtattc
attacaagaacacccgatttcccaaacaaaaaagccatcatcgacgacatcacatcccaa
ttcccggccgtcaagtccattgtccaaaacatcaacccaaaacgcaccaacgtcatcttc
ggcgatcaaacaaccgtgctctggggcgaagaatatatttacgattacatcggggacatc
aagtttgcgatatcggcaagatctttctatcaggtgaatcctgagcagactagggttctt
tatgataaagcgctggagtatgcagatttaagtggtgaggaatcagttatcgatgcatat
tgtggtatcggaacgatttcattgttcttagcacagaaggctaagaaagttttcggtgtg
gaaattgttcctgaggcaattgaagatgccaaacgcaatgcagcattgaacggaattgaa
aatgctgagtttgcagtaggtgaagctgaagtagtcattccaaagtggtatgaagaaggg
aatacagcagatgttattgtagtcgatccgcctcgaaaaggatgcgacgaagccttgctg
cagacgattttggatatgaagccaaagaaagttgtatatgtgagctgtaatccagcgacg
ctagcaagagatttgcgtgtgttggaggatggcggatacgctacggtggaagttcagcct
gttgatatgtttccccatactactcatgtggagtgctgttcactacttgtaagtaaagaa
aaataa
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