Metabacillus dongyingensis: K8L98_11280
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Entry
K8L98_11280 CDS
T07997
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mdg
Metabacillus dongyingensis
Pathway
mdg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mdg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K8L98_11280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdg03019
]
K8L98_11280
Messenger RNA biogenesis [BR:
mdg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K8L98_11280
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
UAL54311
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Position
2269172..2270836
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AA seq
554 aa
AA seq
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MNKQTENIKIIALGGVGEIGKNLYVIEIDHNIFIVDAGLMYPEAGMLGIDMVIPDITYLR
ENADRVKGIFLTHGHDENIGGVFYVLRHLSIPVYGTKLTLALVSQKVKELNPKQKTDYQE
VDSTTVLDFDGVNVSFFRTIHSIPDSVGVCFHTSLGAIVHTGDFKFDTTPVLNTSSDLGK
MALIGERGVLCLLSDSTNAERPGFTASETVVGHEITDAMYNANGRTIVAIYASNINRIVQ
VIEAASDNKRKLVLLGNSIKNVYEIAKNLGYITESENLIIPVQDIDKYPKNEVAILTTGH
QGEPLTVLTRMAKGAHKQIRIEKDDTVIISATPVPGNELHFSKTVDLLYRAGANVIFGQK
QIHVSGHGSQEELKLMLNMMKPKYFIPINGEYKMQKAHAKLAKSAGIENENIFVVEKGDV
IEFSQHKVKSISKVPSGNVLIDGLGVGDIGNIVLRDRRLLSQDGILIVVVTLDRSKKVMI
SGPEIISRGFVYVRESEELILKASEMVTEIVEKSMQGHGIEWSALKLNIREALNRFLFEQ
TKRRPMILPIIMEI
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
ttgaataaacagacagaaaacatcaagattattgccctaggcggagttggagaaattggc
aagaatttgtatgtcattgaaatcgatcataacatctttatcgttgatgctggattaatg
tatccagaagccgggatgttagggattgatatggtcattcctgacattacatacttgcgg
gagaatgcagatcgggtgaagggcatctttttaacacatggtcacgacgagaacattggc
ggcgttttctatgtgctgagacatctgtccattccggtttatggaacaaaactgactctt
gctttagtgtcccaaaaagttaaagaactaaatccgaaacaaaaaacagattatcaggaa
gttgattccaccactgttttagattttgatggcgtgaatgtatctttcttcagaacgatt
cacagcatccctgattcagtcggagtatgcttccatacatcactgggagcgattgtgcac
acgggagattttaaatttgatacaactcctgtgcttaatacaagctctgatttaggcaaa
atggccttgatcggagagcgaggtgtcctttgccttctgtctgacagtacaaatgctgaa
cggccaggctttacagcttctgaaaccgttgtggggcatgagataacagatgctatgtac
aatgcaaatggaagaacgattgtagcgatttacgcatcaaacatcaaccgcatcgttcag
gtgattgaagctgcatctgataataagagaaaactagtcctgcttggaaattcaataaaa
aatgtttatgaaattgcaaaaaatttaggatacatcactgaaagtgaaaatttaatcata
cccgtccaagatatagataaatatcctaaaaatgaagtagcgattctgacaacaggtcat
cagggagaaccactcactgtattaacccgtatggcaaaaggcgcgcataaacaaatccga
attgaaaaagatgatacagttattatctctgcgacacctgttccaggaaatgagcttcat
ttttctaagacagtcgatttactctaccgcgctggtgccaatgtcattttcggacaaaag
caaatccatgtatcaggacacggcagccaggaagaattaaaattgatgctgaatatgatg
aagccaaaatactttattccgattaacggcgagtacaaaatgcaaaaagcacatgctaaa
cttgctaaatctgccggaatagaaaatgagaatattttcgttgttgaaaaaggcgatgtg
attgagttctcacagcataaagttaaatctatatctaaagtgccttcagggaatgttctg
atagacggattgggcgttggcgatattggaaacattgtgctgagagaccggagacttctt
tctcaggacggcattctcattgttgtagttacactcgatcgctctaaaaaagtaatgatt
tccggacctgagattatttctagaggatttgtctatgtcagggaatcagaagaacttatt
ttaaaagcttctgaaatggtaactgaaattgttgaaaaaagcatgcagggccatggaatt
gaatggtctgctttaaaattaaatatccgcgaggcgctgaatcgtttcttatttgaacaa
acaaagcgcagaccgatgattttaccgatcatcatggaaatctaa
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