Methylomonas sp. DH-1: AYM39_06730
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Entry
AYM39_06730 CDS
T04396
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
mdh
Methylomonas sp. DH-1
Pathway
mdh03420
Nucleotide excision repair
mdh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mdh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AYM39_06730 (uvrD)
03430 Mismatch repair
AYM39_06730 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mdh03400
]
AYM39_06730 (uvrD)
Enzymes [BR:
mdh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AYM39_06730 (uvrD)
DNA repair and recombination proteins [BR:
mdh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AYM39_06730 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
AYM39_06730 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
Ub-Mut7C
Motif
Other DBs
NCBI-ProteinID:
ANE54906
UniProt:
A0A172U6M0
LinkDB
All DBs
Position
complement(1456634..1458796)
Genome browser
AA seq
720 aa
AA seq
DB search
MDASSLIAPLNDQQRLAVSAPSQAMLVLAGAGSGKTRVLVHRIAWHIKVNHVSPYHILAV
TFTNKAANEMRGRIEDLLNTSARSMWIGTFHGLAHRLLRQHAKQAKLPETFQVMDSDDQL
RIVKRLVKSLNLDDSKWPPKQAQWFINAQKDEGIRARHMQDSGDFYLRQMRQIYLAYEEL
CDRSGLVDFAELLLRAHELLRDNADLLSFYRERFQQVHVDEFQDTNTIQYAWLRLLTEGN
NNLFVVGDDDQSIYGWRGAKIENIYAFQKHYPQHGVIRLEQNYRSSGHILKAANTLIANN
DNRMGKELWTDAGDGHAIALYSAFNEQDEAYFVVEKIRQWVRDGGLRSETAILYRSNAQS
RQFEERLMTTATPYRVYGGLRFFERMEIKNALAYLRLSSNPHDDASFERVVNTPTRGIGA
KTLDDMRILARQQQLSLWQAAQAMLEQSQLPARAANALRGFMNLVLELGTATQGFNLHET
VKHVVEASGLIELYKKEKQDKGEARVENLEELVNAARLFDYDRENAENLSELDMFLAHAA
LEAGEMQGEADEDCVQLMTLHSAKGLEFKLVFLVGLEEGLFPSQQALDDPGRLQEERRLC
YVGITRAMQQLYLTHAESRRLYGKDSYPRASRFLRELPQESIQEIRLRANVTRPTAAAPS
VSATLGGSTFKLGQTVRHEKFGEGVVLQTEGEGDQERVQINFRNAGLKWLMLAYAKLDRV
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggatgcctcttctctgattgccccgttaaacgaccagcaacgcctggccgtttcggcc
ccttcccaagccatgctggtactggccggcgccggtagcggcaaaacccgggtgctggtg
caccgcatcgcctggcatatcaaagtcaaccacgtctcgccttaccacatcctggccgta
acctttaccaacaaggctgccaacgagatgcgcggccggatcgaggacttgttgaacacc
tccgcccgctcgatgtggatcggcacctttcacggcctggcccaccgtttgcttaggcaa
cacgccaagcaagccaaactgccggaaacgtttcaggtgatggacagcgacgaccaattg
cgcatcgtcaaacgcctggtcaagagtctgaacctggatgacagcaaatggccgccgaaa
caagcgcaatggttcatcaatgcgcaaaaggacgaaggcatccgcgcccgccacatgcag
gacagcggcgatttttacctgcgacagatgcgccagatctatctggcatatgaagaactg
tgcgaccgctccggcctggtcgattttgccgaactgctgctgcgcgcccacgaattgctg
cgcgacaacgccgacctgctgagtttttaccgcgagcgcttccagcaggttcacgtcgac
gaattccaggacaccaacactatccaatacgcttggttgcggctattgaccgaaggcaac
aacaacctgttcgtcgtcggcgacgacgaccaatcgatttacggctggcgcggcgccaaa
atcgagaatatctacgccttccaaaaacactatccgcaacacggcgtgattcgcctggaa
cagaattaccgttccagcggccacatcctgaaggcggccaacaccctgatcgccaacaac
gacaaccggatgggcaaagagctgtggaccgacgccggcgacggccacgccatcgccttg
tattcggccttcaacgaacaggacgaagcctatttcgtcgtcgaaaaaatccggcaatgg
gtgcgcgacggcggtttgcgcagcgagaccgcgattttgtaccgctccaacgcccaatcc
cgccagttcgaagaacggctgatgaccaccgcgacgccataccgggtttacggcggtttg
cgttttttcgaacggatggagatcaaaaacgccctcgcctatctgcgcctgtccagcaac
ccgcacgacgacgcctcgttcgagcgcgtggtcaacacaccgacccgcggcatcggcgcc
aaaaccctggacgacatgcgcattctggcccgccaacagcaactttcgctgtggcaggcg
gcgcaggccatgctggagcaaagccagttgccggcccgcgccgccaacgcgctacgcggc
ttcatgaatctggttctggaactaggaacggccacccaaggtttcaatttgcacgagacc
gtcaagcacgtcgtcgaagccagcggcctgatcgaactgtataaaaaggaaaaacaggac
aagggcgaagcccgggtggaaaacctggaagagctggtcaatgctgcccgcttgttcgac
tacgaccgcgagaatgcggaaaacctgtcggagctggacatgtttctggcccacgccgcg
ttggaagccggcgaaatgcaaggcgaagccgatgaggattgcgtgcaactgatgacgctg
cactccgccaagggtttggaattcaagctggtgtttctggtcggcctggaagaaggcctg
ttcccgtcccagcaggcgctggacgatcccggccggctacaggaggaacgccggctatgc
tacgtcggcatcacccgcgccatgcaacaattgtatttgacccacgccgaatcgcgccgt
ctgtacggcaaggacagttacccgcgggcctcgcgttttctgcgcgaactgccgcaggaa
tcgatacaggaaatccgcttgcgcgccaacgtcacccgccctaccgccgctgcgccgtcg
gtatccgcaactttgggcggcagcaccttcaaactcggccaaaccgtccgccacgaaaaa
ttcggcgaaggcgtcgtattgcaaaccgaaggcgaaggcgatcaggagcgagtgcaaatc
aacttccgcaacgccggtttgaagtggctgatgttggcctacgccaaattggatagggtt
tag
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