Methylomonas sp. DH-1: AYM39_07090
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Entry
AYM39_07090 CDS
T04396
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
mdh
Methylomonas sp. DH-1
Brite
KEGG Orthology (KO) [BR:
mdh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mdh03016
]
AYM39_07090
Enzymes [BR:
mdh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
AYM39_07090
Transfer RNA biogenesis [BR:
mdh03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
AYM39_07090
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
HTH_11
CFAP141
Motif
Other DBs
NCBI-ProteinID:
ANE54968
UniProt:
A0A172U725
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All DBs
Position
1533248..1534396
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AA seq
382 aa
AA seq
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MSIQYIDSPDQIENLCRQIANEPWIALDTEFLREKTYYPKFCLLQIAAPGWVACVDPLAI
TDLSALFEAIYQPNIVKVLHSCRQDLEIFYQITGKIPGPIFDTQIAAPLLGFQENPGYAM
LVSSFLNVNLSKAHTRTDWSERPLSADQIQYAADDVIYLCQIYTAMCEQLAALGRLHWLE
SDFALLNNPELYQLSPENAWLKIRGKNKLTGKQLSIMQSLSEWRERTAQQENKPRNWLMQ
DDMLLELAKLQPVTLAELAKIRNINERTVNRYGKALCALVEEARQRPPKPMAGKENAVKK
NQQHEAILDVLSAVVRIRAEENSLNPVILASRKDLEQLLFGDEDCLLLHGWRYNMAGREL
QGLLQGDYSLSLKPEGVVISAA
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atgtccatccaatatatcgatagccccgaccaaattgaaaacctctgccggcagattgcc
aacgagccttggatcgctctggataccgagtttctccgcgaaaaaacctactaccccaaa
ttctgcctgctgcaaatcgccgcgccgggttgggtggcttgtgtcgatccgttggccata
accgatttgagcgcgctgttcgaggcgatttaccaaccgaatatcgtcaaggtgctgcat
tcctgccgccaggatctggagattttttaccagatcaccggcaagattccggggccgatc
ttcgatacccagattgccgcaccgctgctgggctttcaggaaaaccccggttacgccatg
ctggtttccagctttttgaacgtcaacttaagcaaggcgcatacccgcaccgattggtcg
gagcggccgttgagcgccgaccaaatccaatacgccgccgacgacgtgatttatctgtgc
cagatttatacggcaatgtgcgagcaattggcggcgctgggccgcttgcattggctggag
agcgacttcgccttgttgaacaatccggagctgtaccaattgtcgccggagaatgcctgg
ttgaaaatccgcggcaaaaacaagctgaccggcaagcaattgtcgatcatgcaaagcttg
agcgaatggcgcgagcgcaccgcgcagcaggaaaacaagccgcgcaactggttgatgcag
gacgatatgctgttggaattggccaagctgcaaccggtgacgttggcggaattggccaag
atccgcaatatcaacgaacgcaccgtcaaccgttacggcaaggccctgtgcgctctggtc
gaagaggccaggcagcggccgccgaagccgatggccgggaaggaaaacgcggtcaaaaag
aaccaacaacacgaagccatcttggatgtgttgagtgccgtggtcaggattcgtgccgag
gaaaattcgttgaacccggtgatcctggcctcgcgtaaggacttggagcagttgttgttc
ggcgacgaagattgcctgttgctgcacggttggcgctacaacatggccggccgcgaattg
caaggcctgctgcagggcgattattcgctgagcctgaagccggaaggcgtggtcatcagc
gccgcgtaa
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