Methylomonas sp. DH-1: AYM39_10035
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Entry
AYM39_10035 CDS
T04396
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
mdh
Methylomonas sp. DH-1
Pathway
mdh03410
Base excision repair
mdh03430
Mismatch repair
mdh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mdh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AYM39_10035
03430 Mismatch repair
AYM39_10035
03440 Homologous recombination
AYM39_10035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mdh03400
]
AYM39_10035
DNA repair and recombination proteins [BR:
mdh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
AYM39_10035
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
AYM39_10035
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AYM39_10035
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
Peripla_BP_6
Motif
Other DBs
NCBI-ProteinID:
ANE57696
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Position
2224814..2226487
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AA seq
557 aa
AA seq
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MDPVLQRIFNSRGVQNAEQLDRGLARLPSPWLLSGMKAMAEHLLAALERQSKITVVADFD
ADGATSCALALKGLALLGAENLDFVVPNRFEYGYGLTPEIVELVKRQKPDIILTVDNGIS
SIDGVKAAKAAGFTVLITDHHLPGAELPAADAIVNPNLADDKFPSRNIAGVGVMFYILMA
LRIRLRETHWFEKRGIAEPNLAQFLDYAALGTVADVVALDQVNRILVHQGLLRIRSGQCQ
PGIKALVEVAGKSLSSIHASDLGFAVAPRLNAAGRMDDMTLGIQCLLTNDPSLARDIAEQ
LHALNQDRKEVEGQMKTEAMAVLAEMKALDEQHVPAGVCLFDANWHQGVIGILAARIKDR
VHRPVIAFAPAENGDIKGSARSIAGVHVRDVLSDIAARHPQILTKFGGHAMAAGLTIKLH
DYPHFALAFAETVAGKLENVDLQQKVYSDGELDERHLTLEFAETLRQAAVWGQAFPEPEF
NGVFDVIQCRIVGHQHLKFVLRLPFSGQMLDAIAFFADHPEKWLGCRKINAAYKLDINEF
RSQRSLQLLLHYLEKLE
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atggacccggtgttgcaacggattttcaacagtcgcggcgtgcagaatgccgagcaactc
gatcgcggtttggcgcggttgccgtcgccgtggttgttgtcgggtatgaaggccatggcc
gaacacttgctcgccgccttggagcggcaaagcaaaatcaccgtggtggccgacttcgat
gccgacggcgccaccagttgcgcgttggcgctgaagggattggctttgctgggggccgaa
aatttggatttcgtggtcccgaaccgcttcgagtacggctacggtttgaccccggaaatc
gtcgagttggtcaaacggcagaagccggacatcattcttaccgtcgataacggcatctcc
agcatcgacggcgtcaaagccgcgaaagccgccggctttaccgtattgatcaccgaccac
catttgcccggcgcggaattgccggcagccgacgccatcgtcaacccgaacctggcggac
gacaaatttcccagtcggaatattgccggcgtcggcgtgatgttttatatcctgatggcg
ttgcggatccggttaagggaaacccattggttcgaaaaacggggcatcgccgaacccaat
ttggcccagtttctggattatgcggctttgggcacggtggccgacgtggtggcattggat
caggtcaaccggatactggtgcaccaggggctgctgcggattcgttccggccaatgccag
cccggcatcaaagccctggtggaagtagccgggaaatcgctgtcaagcatacatgccagc
gatttgggctttgccgtcgcgccgcgcttgaacgccgccgggcgcatggacgatatgacc
ttgggcatccagtgcctgttgaccaacgaccccagtttggcgcgggatattgccgagcaa
ctgcatgcgttgaaccaggaccgcaaggaagtcgaaggccaaatgaaaaccgaggccatg
gccgtactggccgaaatgaaggcgttggacgagcagcatgtgccggctggcgtctgtctg
ttcgacgcgaattggcaccagggggtgatcggcattctggcggcccggatcaaggaccgc
gtgcaccggccggtgattgcgttcgcgccggccgagaacggcgatattaaaggttccgcc
cgttcgattgccggcgtgcacgtgcgcgacgtgctcagcgacatcgccgcccggcatccg
cagattctgactaaattcggtggccacgcgatggcggcgggcttgaccataaaactgcac
gactatccgcattttgctctagccttcgccgaaacggtggcaggcaagctggaaaacgtc
gatctgcagcagaaagtttattccgacggcgaactcgacgagcgccatctgacgctggaa
ttcgccgaaaccttgcgccaggccgcggtgtggggccaagcctttccggagcccgaattt
aatggcgtgttcgatgtgatccaatgccgtatcgtcggtcaccagcatttgaaattcgtg
ttgcgactgccgttcagcgggcaaatgctggatgcgattgccttctttgccgaccacccg
gaaaaatggctcggctgccgcaaaatcaacgcggcgtataagttggacatcaacgagttt
cgcagccagcgcagcctgcaactgttgttgcattatctggagaaattggagtga
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