Methylomonas sp. DH-1: AYM39_14155
Help
Entry
AYM39_14155 CDS
T04396
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mdh
Methylomonas sp. DH-1
Pathway
mdh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mdh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AYM39_14155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdh03019
]
AYM39_14155
Enzymes [BR:
mdh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AYM39_14155
Messenger RNA biogenesis [BR:
mdh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AYM39_14155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_25
AAA_19
UvrD-helicase
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ANE56210
LinkDB
All DBs
Position
complement(3202461..3203765)
Genome browser
AA seq
434 aa
AA seq
DB search
MLFSELGLSEQLLRAVAEQGYQTPTPIQAQAIPVILQGRDVLAGAQTGTGKTAGFTLPLL
HILQQQPIPQKPRPVRVLVLTPTRELAMQVYESVRTYGKHLPLFAEAIFGGVSINPQIQK
IRRGTDIVVATPGRLLDLIQQQHLDLSHVEHFVLDEADRMLDMGFIRDIRKIIALLPEKR
QNLLFSATYAPEIGALAEQLLNDPVEIAVAKRNAAADTVSQLVYGIQREYKRELLAYLIG
DGHWQQVLVFVRTKHGADRLCKQLIKDGIRCAALHGDKSQGARVRALDEFKNGAITALIA
TDIAARGLDIDQLPHVVNFDLPQVAEDYVHRIGRTGRAGAEGQAISLVDPEEAHLLAAIE
KLLKRQIPRVADTGYPRVSLEPGNGKPPAKPIAPRPKPQQTGRRAQPSGGKSDPGKRTPP
RKPRRGNVNAAKPR
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgttattttcagaactgggtttgtccgaacaattgttgcgggcggttgccgaacaaggt
tatcaaacgccgacgcctattcaggcacaggcgattccggtgattctgcagggtcgagac
gttttggccggtgcgcagaccggtaccggcaagaccgcgggcttcaccttgccgttgttg
cacatcctgcagcaacagccgattccgcaaaaaccgcggccggtcagggtgttggtgttg
acgccgacccgcgagctggcgatgcaggtctacgaaagcgtcagaacttacggcaagcat
ctgccgctgtttgccgaggcgattttcggcggcgtcagtatcaatccgcagattcagaaa
atccgccgcggtaccgatatcgttgtcgccacgccggggcgattgctggatttgattcag
caacagcacctggatttgtcccacgtcgagcattttgtgctggacgaggccgaccggatg
ctggatatgggtttcatccgcgatattcgcaaaatcatcgcgctgttgccggaaaaacgg
caaaacctgctgttttccgcgacttacgcgccggaaatcggtgcgttggccgagcaattg
ctgaacgatccggtcgagatcgccgtggctaaacgcaatgccgccgcggataccgtctcg
caattggtttacggcattcagcgcgaatacaaacgcgagctgttggcgtatttgatcggc
gacggccattggcagcaagtactggtatttgtgcggaccaaacacggcgcggaccgcttg
tgtaagcaattgatcaaagacggcatccgttgcgcggccttgcacggcgataagagccag
ggcgccagggtccgggctttggacgaatttaaaaatggtgcgattactgcgttgatcgcg
accgatattgccgcgcgcgggctggatatcgaccaattgccgcatgtcgtcaatttcgac
ttgccgcaggtcgccgaagattacgtgcaccgcatcggccgcaccggccgggccggcgcg
gaagggcaggccatttcgttggtcgacccggaagaggcgcatttgttggcggcaatcgaa
aaattgttgaaacggcaaattccgcgcgtcgccgataccggttaccctcgcgtatcgttg
gagcccggcaacggcaagccgccggcaaagccgatagcgccgcggcccaaaccgcagcaa
accgggcgccgcgcccaaccaagcggcggcaagtccgatcccggcaaacgcacccctccg
cgcaaaccgcgccgcggcaacgtcaacgccgctaaacctcgttag
DBGET
integrated database retrieval system
