Methylomonas sp. DH-1: AYM39_14355
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Entry
AYM39_14355 CDS
T04396
Name
(GenBank) DNA-(apurinic or apyrimidinic site) lyase
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
mdh
Methylomonas sp. DH-1
Pathway
mdh03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mdh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AYM39_14355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mdh03400
]
AYM39_14355
Enzymes [BR:
mdh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
AYM39_14355
DNA repair and recombination proteins [BR:
mdh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
AYM39_14355
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
DUF5648
Motif
Other DBs
NCBI-ProteinID:
ANE56245
LinkDB
All DBs
Position
3249687..3250463
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AA seq
258 aa
AA seq
DB search
MLRIISANLNGIRSAANKGFYQWLRNQNADFVCLQELKAQAADLTAQMLNPDGLHGYFHY
AEKKGYSGVGIYSKTPADAVIEGLGYADIDSEGRYLEIRVGNLSIVSLYLPSGSSGEERQ
AIKFSVMERFFPHLAELIGSGREVVVCGDWNIAHRPADLKNWRGNQKNSGFLPEERAWMT
RVLDELGWVDTYRYLHPDATDDCYTWWSNRGQAWAKNVGWRIDYQIATPGIGGKATAAQI
YKQQRFSDHAPLTIDYLP
NT seq
777 nt
NT seq
+upstream
nt +downstream
nt
atgctccgcattatttccgccaacttgaacggtatccgttccgcagctaataaaggtttt
taccaatggcttcgcaaccagaatgccgatttcgtttgcctgcaggaactgaaagctcaa
gccgccgacctaactgcccagatgctgaatccggacggcctgcacggctacttccattac
gccgagaaaaaaggctacagcggcgtcggcatttatagcaaaacgccggccgatgccgtt
atcgaaggcctgggatacgccgatatcgacagcgaaggccgctatttggagatccgggtc
ggcaacttgtctatcgtctcgctgtacctgccgtccggatccagcggcgaagaacgccag
gcgatcaaattcagcgtgatggagcgatttttcccacatttggcagagctaatcggcagc
ggccgcgaggttgtggtttgcggcgactggaatattgcgcatcggccggccgatctgaaa
aactggcgcggcaatcaaaagaattccggctttttgccggaagaacgggcctggatgacg
cgggtgctggacgaattgggctgggtggacacttaccgttatttgcatcccgacgccacc
gacgactgttacacttggtggagcaaccgcggccaggcttgggccaagaatgtgggatgg
cgcatcgattaccagatcgccacaccgggaatcggcggcaaagcgacggccgcgcaaatc
tacaagcaacagcgtttcagcgaccacgcgccactgaccatcgactacctgccctga
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