Methylomonas sp. DH-1: AYM39_15010
Help
Entry
AYM39_15010 CDS
T04396
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
mdh
Methylomonas sp. DH-1
Pathway
mdh03030
DNA replication
mdh03430
Mismatch repair
mdh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mdh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AYM39_15010
03430 Mismatch repair
AYM39_15010
03440 Homologous recombination
AYM39_15010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mdh03032
]
AYM39_15010
03400 DNA repair and recombination proteins [BR:
mdh03400
]
AYM39_15010
Enzymes [BR:
mdh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AYM39_15010
DNA replication proteins [BR:
mdh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AYM39_15010
DNA repair and recombination proteins [BR:
mdh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AYM39_15010
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Bac_A_amyl_C
Motif
Other DBs
NCBI-ProteinID:
ANE56357
LinkDB
All DBs
Position
complement(3392124..3395612)
Genome browser
AA seq
1162 aa
AA seq
DB search
MNPNFVHLRIHTEFSLVDGIVRIKPLVKKLGEYQMPAAAITEQSNLFSLVKFYKAAQGAG
IKPIAGADVWIYNPEEPAAPHRLTLLARNQPGYVTLTELVSRGYQEGQHQGIPMLQKEWI
AENHVGLIALSAAMQGDIGAALLAENRAQARACAEFWSGLFPDSFYLELQRVGKADEERY
IGLAVELAAELDLPVVATNDVRFLNPSDFDAHEVRVCIHQGRVLDDSRRPKDYTNQQYLR
SAEEMAELFADIPEALQNSVEIAKRCTVELRLGENFLPDFEVPEGMTLADYFKQASREGL
EERLQQHPPVGKGSFEENRKVYDERLEIELNVIVQMGFPGYFMIVADFIQWAKNNDIPVG
PGRGSGAGSLVAYALKITDLDPIEFDLLFERFLNPERVSMPDFDIDFCMERRDEVIDYVA
RHYGRDHVSQIITYGSMAAKAVIRDVGRVMGHAYGFVDRLAKLIPFEIGMTLDKALKESQ
ELKDLYDSEEDVKQLIDMARALEGISRNAGKHAGGVVIAPTKLTDFSPLYCEQGGGNLVT
QFDKDDVEAVGLVKFDFLGLRTLTIIDWALQTINRQRAAKGEPPVDISQIPRDDQASYEL
LKNAQTTAVFQLESSGMKALIKKLKPDCFDDIIALVALFRPGPLESGMVDDYINVKHGAK
AEYAHPLLEPILKPTNGVILYQEQVMQIARELASYTLGGADMLRRAMGKKKPEEMAKERE
KFMSGAVANQIDAGIATYVFDLMEKFAGYGFNKSHSAAYALVAYQTAWLKAHYPAAFMAA
VMSSDMDNTDKVVVLIEECREMKLQICPPDINLSDFRFTVNDKGQIVYGIGAIKGVGENA
IDDLLKERNANGPYSGLYDLCKRVDLRKVNRRVLEALIKAGALDSIDPNRAAHMAELTTA
LRVAEQHGKMALAGQNDLFGLGVEVEESDNEADAYSTVVEPWTEKEKLEAEKQTLGLFLS
GHPIAEYLPELKHITHGTLGSLEVDAGRSRGKMEARVAGLIVEMRTRQTKQGKMMGFATL
DDRTGRLEVAAFSGIFDKYRNLLNKDTILVAEGSLAMDDFSNSLRMTAEKLYGMEEAREV
FARGITLQIDAANPELPSDWLGRLQETLLPFRGGQCPVELEYRTAGDKAALKLGDEWRVR
PADELLIRLRRLLSAEKVAVRY
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgaatccgaacttcgtccatctccgcatccacaccgagttctcgctggtcgacggtatc
gtccgcatcaagccgctggtaaaaaaactcggcgaataccaaatgccggctgccgccatt
accgaacagagcaatctgttttcgttggtcaaattctataaggccgcccagggtgctggc
atcaagccgattgccggcgccgacgtttggatttacaacccggaagaacccgccgcgccg
catcgcctgaccttgctggctcgtaaccagccaggctatgtgacgctgaccgaattggtg
tcgcgcggctatcaggaaggccagcatcaaggtattccgatgctgcagaaagagtggatc
gccgaaaaccatgtcggattgatcgcattgtccgcggcaatgcagggcgacataggcgcc
gcgctgttggcggaaaatcgcgcacaagctcgagcctgcgccgagttttggagcggttta
ttcccggatagcttttatttggaattgcaacgggtcggtaaggcggacgaagaacgctat
atcggtttggcggtggagttggcggccgaattggacttgccggtcgtcgccaccaacgat
gtgcggtttttgaatccaagcgacttcgacgctcacgaagtgcgggtctgcattcaccag
ggccgggtgctggacgatagccggcggccgaaagactataccaatcagcaatatctgcgc
agcgccgaggaaatggccgagctgttcgccgatatcccggaagcgttgcaaaacagcgtc
gaaatcgccaaacgttgcaccgtcgaattgcgactgggcgaaaacttcctgcccgatttc
gaggtgccggaaggcatgacgctggccgactatttcaagcaagcctcgcgcgaaggattg
gaggagcgcctgcagcagcatccgccggtcggcaagggcagcttcgaggagaatcgcaag
gtttacgacgagcgtctggaaatcgagctgaacgtcatcgtgcagatgggttttcccggc
tactttatgatcgtcgccgactttatccagtgggccaagaataacgatattccggtcggg
cccggccgggggtccggcgccggttcgctggtggcctacgcgttgaagatcaccgacctc
gaccccatcgaattcgacctgctgttcgagcgctttttgaacccggagcgggtgtcgatg
ccggacttcgatatcgacttttgcatggaacgccgcgacgaggtgatcgactacgtggcc
cgccattacggccgcgaccatgtgtcgcagattatcacctacggttcgatggcggccaag
gcggtgattcgcgacgtcggccgggtcatgggccacgcctatggcttcgtcgaccggctg
gcgaaactgattccgttcgagatcggcatgacgctggacaaggcgctgaaagaaagccag
gaattgaaagacctgtacgacagcgaggaagacgtcaagcaattgatcgacatggctcgt
gcgctggaaggtatttcccgcaatgccggcaaacacgccggcggcgtcgtcatcgcaccg
accaagctgaccgacttttcgccgctgtattgcgagcagggcggcggcaatctggtcacc
cagttcgacaaggacgatgtcgaggcggtcggtctggtcaagttcgactttttgggactt
agaaccctcaccatcatcgattgggccttgcagaccatcaaccgccagcgcgccgccaag
ggcgaaccgccggtcgacattagccaaattccgcgcgacgatcaggccagctacgaattg
ctgaaaaacgcccagaccacggcggtgttccagctcgaatctagcggcatgaaggccttg
attaagaaactgaagcccgactgcttcgacgacatcatcgcgctggtggcgttgttccga
cccggcccgctggaatcgggcatggtcgatgactacatcaacgtcaagcacggcgccaag
gccgagtacgcccatccgctgctggaaccgatcctgaaaccgaccaacggcgtcattctc
taccaggaacaggtgatgcaaatcgcccgcgagctggccagctacacgttgggcggcgcc
gacatgttgcggcgggcgatgggtaagaaaaagcccgaggaaatggctaaggagcgggag
aaattcatgtccggcgccgtcgccaaccaaatcgacgccggcatcgccacctacgtgttc
gacttgatggagaagttcgccggctacggtttcaacaagtcgcactcggccgcctacgcg
ctggtggcctaccagaccgcgtggctgaaagcgcattacccggccgccttcatggcggcg
gtgatgtcgtcggacatggacaacaccgacaaggtggtggtgttgatcgaggaatgtcgg
gaaatgaagttgcaaatttgcccgcccgacatcaacctgtccgactttcgcttcacggtc
aacgacaagggccaaatcgtctatggcataggtgcgatcaaaggcgtcggcgaaaacgcc
atcgacgatttgctgaaagagcgcaacgccaacgggccgtattccggcctctacgatttg
tgcaagcgcgtcgatttgcgcaaggtcaaccgccgggtgctggaagcgctgatcaaggcc
ggggcgctggattccatcgacccgaaccgcgccgcacacatggccgagttgaccaccgcg
ctgcgggtcgccgaacagcacggcaagatggcgctggccggccagaacgacttgttcggg
ctgggcgtggaagtcgaggagagcgacaacgaggccgacgcttattccaccgtggtcgag
ccgtggaccgaaaaagaaaagctggaagcggaaaaacagacattgggcttgtttctttcc
ggccatccgattgccgaatacctgccggaactgaaacacattacccatggcacgctgggc
agtctggaagtcgacgccggtcgcagccgcggcaagatggaagcgcgcgttgccggcctg
atcgtcgaaatgcgtacccgccagaccaagcagggcaagatgatgggcttcgccacgctg
gacgatcgcaccggccggctggaggtcgccgctttcagcggtattttcgataaataccgc
aacctgctgaacaaggatacgattttggttgcggagggctcgctggcgatggacgatttc
agcaatagcctgcgcatgaccgccgaaaaactgtacggcatggaagaggcgcgcgaggtg
tttgcgcgaggcattacgttgcagatcgatgccgccaaccccgagctgccgagcgactgg
ttggggcgattacaggaaacattattgccgttccgcggcgggcaatgtccggtcgaactc
gaataccgcacggctggcgataaggccgcgttgaaattgggcgacgaatggcgggtgcga
ccggccgacgaacttttgatccggttacgccggttgttgagcgcggagaaggtcgcggtc
cgctattga
DBGET
integrated database retrieval system
