Methylomonas sp. DH-1: AYM39_15825
Help
Entry
AYM39_15825 CDS
T04396
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
mdh
Methylomonas sp. DH-1
Pathway
mdh03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mdh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AYM39_15825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mdh03400
]
AYM39_15825
Enzymes [BR:
mdh01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
AYM39_15825
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
AYM39_15825
DNA repair and recombination proteins [BR:
mdh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
AYM39_15825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
PQQ_2
Motif
Other DBs
NCBI-ProteinID:
ANE56498
UniProt:
A0A172UBF3
LinkDB
All DBs
Position
3568315..3569130
Genome browser
AA seq
271 aa
AA seq
DB search
MPELPEVETSRRGIAPHILGKTFKAVEVREPRLRWPVSAEIGAVLPGQTLRSVERRGKYL
LLGAETGTLILHLGMSGNLRITAPDQLPGKHDHVDFVFADDTVLRFNDQRKFGAALWTSA
DPLQHPLLAELGPEPLSAEFDAAYLQRRAGQRSACIKSLIMDSHIVVGVGNIYASESLFL
AGVLPTRAAGSLQTAEFERLAASIKTVLGKAIEQGGTTLRDFTNAEGKPGYFKQALAVYG
RGGEPCRTCAEPVRHLKIGQRASYYCGRCQC
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgccggaattacccgaggtcgaaaccagccggcgcggcatcgcgccgcatattctgggc
aaaacgttcaaggcggtcgaggtacgcgagccgcgcttgcgctggccggtttcggccgaa
atcggcgcggttctgcccggccaaactctgcgctcggtcgagcgccgcggcaaatacctg
ttgctcggcgccgaaaccggaacgctgattctgcatctgggcatgtccggtaatttgcgg
atcacggcgcccgaccagttgcccggcaaacacgaccacgtcgatttcgtatttgccgac
gatacggtgttgcggttcaacgaccagcgcaaattcggcgcggcgctgtggacttctgcc
gatccgctgcagcacccgctgctggcggagctggggcctgagccgttatcggccgaattc
gacgcggcatatttgcaacggcgcgccggccaacgctcagcgtgcatcaaaagcctgatc
atggacagccacattgtggtcggcgtcggcaatatttacgccagcgaatcgttatttctg
gcgggcgtgctgccgacgcgcgcggccggaagtttgcaaacggcagagttcgaacgtctg
gcggcctcgatcaaaaccgtactgggcaaagccatcgaacaaggcggcaccacgctgcgc
gactttaccaacgccgagggcaaacccggctatttcaaacaggcattggccgtctacggc
cgcggcggcgaaccctgccgaacctgcgccgaaccggtccggcatttgaaaatcggccaa
cgcgccagttattactgcggccgctgccagtgctga
DBGET
integrated database retrieval system