KEGG   Methylomonas sp. DH-1: AYM39_15825
Entry
AYM39_15825       CDS       T04396                                 
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
mdh  Methylomonas sp. DH-1
Pathway
mdh03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:mdh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    AYM39_15825
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mdh03400]
    AYM39_15825
Enzymes [BR:mdh01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     AYM39_15825
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     AYM39_15825
DNA repair and recombination proteins [BR:mdh03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     AYM39_15825
SSDB
Motif
Pfam: Fapy_DNA_glyco H2TH zf-FPG_IleRS PQQ_2
Other DBs
NCBI-ProteinID: ANE56498
UniProt: A0A172UBF3
LinkDB
Position
3568315..3569130
AA seq 271 aa
MPELPEVETSRRGIAPHILGKTFKAVEVREPRLRWPVSAEIGAVLPGQTLRSVERRGKYL
LLGAETGTLILHLGMSGNLRITAPDQLPGKHDHVDFVFADDTVLRFNDQRKFGAALWTSA
DPLQHPLLAELGPEPLSAEFDAAYLQRRAGQRSACIKSLIMDSHIVVGVGNIYASESLFL
AGVLPTRAAGSLQTAEFERLAASIKTVLGKAIEQGGTTLRDFTNAEGKPGYFKQALAVYG
RGGEPCRTCAEPVRHLKIGQRASYYCGRCQC
NT seq 816 nt   +upstreamnt  +downstreamnt
atgccggaattacccgaggtcgaaaccagccggcgcggcatcgcgccgcatattctgggc
aaaacgttcaaggcggtcgaggtacgcgagccgcgcttgcgctggccggtttcggccgaa
atcggcgcggttctgcccggccaaactctgcgctcggtcgagcgccgcggcaaatacctg
ttgctcggcgccgaaaccggaacgctgattctgcatctgggcatgtccggtaatttgcgg
atcacggcgcccgaccagttgcccggcaaacacgaccacgtcgatttcgtatttgccgac
gatacggtgttgcggttcaacgaccagcgcaaattcggcgcggcgctgtggacttctgcc
gatccgctgcagcacccgctgctggcggagctggggcctgagccgttatcggccgaattc
gacgcggcatatttgcaacggcgcgccggccaacgctcagcgtgcatcaaaagcctgatc
atggacagccacattgtggtcggcgtcggcaatatttacgccagcgaatcgttatttctg
gcgggcgtgctgccgacgcgcgcggccggaagtttgcaaacggcagagttcgaacgtctg
gcggcctcgatcaaaaccgtactgggcaaagccatcgaacaaggcggcaccacgctgcgc
gactttaccaacgccgagggcaaacccggctatttcaaacaggcattggccgtctacggc
cgcggcggcgaaccctgccgaacctgcgccgaaccggtccggcatttgaaaatcggccaa
cgcgccagttattactgcggccgctgccagtgctga

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