Methylomonas sp. DH-1: AYM39_18980
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Entry
AYM39_18980 CDS
T04396
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mdh
Methylomonas sp. DH-1
Pathway
mdh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mdh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AYM39_18980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdh03019
]
AYM39_18980
03009 Ribosome biogenesis [BR:
mdh03009
]
AYM39_18980
Enzymes [BR:
mdh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AYM39_18980
Messenger RNA biogenesis [BR:
mdh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AYM39_18980
Ribosome biogenesis [BR:
mdh03009
]
Prokaryotic type
rRNA processing factors
AYM39_18980
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
BrxC-PglY_N
CHP02642
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ANE57052
LinkDB
All DBs
Position
4255765..4257969
Genome browser
AA seq
734 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQKLYDFDIEVPSKEQKKSNIYKGIITRVEPSLEAAFVNY
GAEKHGFLPFKEIAPEYRTGDGQEGKPSSKSNIREGQEIVVQIEKEERGNKGAALTTYIS
LAGTYLVLMPNNPKAGGISRRIEGDNRSELRETMAALEIPDSMGLIIRTAGSDKNVEELQ
WDLNYLLQLWEAIDRSSTEQTAPFLIFQESNVIIRALRDHLRGDIDEILIDQEGAFKLVH
NFLKQVMPHNLHKAKLYQDSVPLFSRYQIETQIEMAYKREVSLPSGGSIVIDHTEALTSI
DINSARATKGSDIEETALNTNLEAADEIARQLRLRDLGGLFVIDFIDMMSNKNQREVENR
LRDALKIDRARIQTGRISRFGLMEMSRQRLRPSLGDSTQLTCPRCKGQGTIRNVESVTLA
VLRLIEEEAMKKGTERVIAHLPIDCATFLLNEKRAAIQEIESRLQVGIIVLPSKHLETPA
YDIERIKAIGDSEEKASHLQIKEEDITVPEFAKQLGPKTEKAAIKEFLPDSPAPVQSKKT
SASLIQRFWQRLIGAGKTVETDEVGEKSGEDKTKPGRNNRRDRGERGERGAGRNNNRRSG
NRRPANQPPAAAGQETAPNLNDDAKPVAASSELESGADNAAKRAPGAPDRERSRRSRSRR
RGPRNGAEKRGEPSLNGTDGEAPQASEYIPPAAVDSGEGHNQPRSYNREFAERNQRPAED
SRQDHEPVRTAAEE
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgcttatcaacgccacgcagcccgaagagctgcgggtggcattggtagat
ggtcagaaactttacgatttcgacatcgaagttccatcgaaagaacaaaaaaaatccaat
atttacaaaggcatcatcacccgggtagaacccagcctcgaagccgccttcgtcaactac
ggcgccgaaaaacacggattcctgccgttcaaggaaatcgccccggaataccgcaccggc
gacgggcaggaaggcaaaccatccagcaaaagcaatatccgcgaaggccaggaaattgtc
gttcaaatcgaaaaagaagaacgcggcaacaaaggcgcggcgctaacaacctacatcagt
ctggccggcacctatctggtgctgatgccaaacaaccccaaagccggcggcatttccagg
cgcatcgaaggcgacaaccgtagcgaattgcgcgaaaccatggccgccctggaaattccg
gacagcatgggcttgatcatccgcaccgccggctccgacaaaaacgtcgaagagctgcag
tgggacttaaactacctactgcaactgtgggaagccatcgaccgctccagcaccgagcaa
accgcgcccttcctgattttccaggaaagcaacgtcatcatccgcgcactgcgcgatcac
ttgcgcggcgacatcgacgaaatcctgattgaccaggaaggcgccttcaaactggtgcat
aacttcctgaaacaggtgatgccgcataatctgcacaaggccaaactgtaccaggacagc
gtgccgctgttcagccgctaccagatcgaaacccagatcgagatggcttataagcgcgaa
gtgtcgctgccgtccggcggctccatcgtcatcgaccacaccgaggctctgacatcgata
gacattaactcggcccgcgccaccaagggcagcgacatcgaggaaaccgcgctgaacacc
aacctggaagcggccgacgaaatcgcccgccaattgcgtctgcgcgacttgggcggtctg
ttcgtgatcgacttcatcgacatgatgtcgaacaaaaaccagcgcgaagtggaaaaccgc
ttacgcgatgcgttaaaaatcgaccgcgctcgtatccagaccggccgcatctcccgcttc
ggcttgatggaaatgtcgcgccaacgcttgcggccgtctttgggcgattcgacccaattg
acctgcccgcgctgcaaaggccaaggcacgatccgtaacgtcgaatcggtcacgctggcc
gtgctgcgcttgatcgaagaagaagcgatgaaaaaaggcaccgagcgcgtcatcgcccac
ttgccgatcgattgcgccaccttcctgctcaacgaaaaacgcgcggcgattcaggaaatc
gaatccaggctgcaagtcggcatcatcgtgctgccgagcaaacacctggaaacgccggct
tacgacatcgagcggatcaaagccatcggcgatagcgaagaaaaagccagccatttgcaa
atcaaagaagaagacatcacggtgccggaattcgccaaacaactgggcccgaaaaccgaa
aaagccgcgatcaaggaatttctgccggattcgccggcaccggtacagagcaaaaagact
tcggccagcctgatacagcgcttctggcaacgcctgatcggcgccggcaagaccgttgaa
accgacgaagtcggcgaaaaaagcggcgaagacaaaaccaaaccgggccgcaataatcgc
cgcgaccgtggcgagcgcggtgaacgtggcgccggccgcaacaacaaccgccgcagcggt
aaccgccgtccggcgaaccagccacccgcagcggctggccaggaaaccgcacccaacctg
aacgacgacgccaaaccggtggcggcaagctccgaactcgaatccggagccgataacgct
gcaaaaagggccccaggcgcgccggaccgggaacgcagccgccgcagccgtagccgccgc
cgcggcccgcgcaacggtgccgagaaacgcggcgaaccaagcctgaacggaacggacggc
gaagcgccgcaagccagcgaatatatcccgccggccgccgtcgacagcggagaaggccac
aatcagccgcgctcatataaccgcgagtttgccgagcggaatcaacgcccggccgaggac
agccggcaagaccacgaacccgtcagaaccgccgccgaagaataa
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