Methylomonas sp. DH-1: AYM39_21785
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Entry
AYM39_21785 CDS
T04396
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
mdh
Methylomonas sp. DH-1
Pathway
mdh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mdh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
AYM39_21785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mdh03400
]
AYM39_21785
Enzymes [BR:
mdh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
AYM39_21785
DNA repair and recombination proteins [BR:
mdh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AYM39_21785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
Viral_helicase1
SH3_13
Helicase_RecD
AAA_11
UvrD-helicase
AAA_22
SLFN-g3_helicase
T2SSE
UvrD_C
DEAD
nSTAND3
AAA_18
AAA_28
AAA_29
AAA_25
TrwB_AAD_bind
Mg_chelatase
AAA_16
SRP54
Motif
Other DBs
NCBI-ProteinID:
ANE57929
UniProt:
A0A172UF68
LinkDB
All DBs
Position
unnamed:complement(52542..54548)
Genome browser
AA seq
668 aa
AA seq
DB search
MTQGLSVLENMDQWIVRGWLSQLNRAFVRFLLDQDQNASDAVLWAGALVSHQLDRGEVYL
DLEKLCQQPGLTLAIPTDDAWKVEHELANRELSALQAFNLEHWLSALKQSKLVALGQGST
PLVLEGGRLYLRRYWHYQQTLNTSIQQRLRPIREHLPVALRDQLTDLFPAIPETAENSKI
PDWQKIACVLALRSRFTIVTGGPGTGKTTTLTKLLALLINLTQYESNHTKKLNILLAAPT
GKAAARVSESIGKALDHLNVSEDIKQAIPKKASTLHRLLGSRHDSRRFIHHRDNPIVADI
VVVDEGSMIDLEMMASLLDALPDTAQLILLGDKDQLASVEAGSVMGDLCFGAENSAYDES
TRAWINQYAGELLDAPTVTGSAINQQTIMLRYSHRFNELSGIGQLAKAVNLGNAEQAQAV
LNNLSTYADLIPEPRTEYLKLREQPNPDAANRLLKKLVTLNAGVNDNGKPNDRQGYGYYL
AVIEENRPADNTQYDDWAKQVLVAFDTFQVLCALRRGVWGIEELNQRIEDWLFPQQKTSL
WYEGRPVMVTRNDYNLGLMNGDIGIALKDSNGKLRVAFPNDDPLADIKIRWISPMRLPDV
ETAFAITVHKSQGSEFSHVALVLPENRSPVITRELIYTGITRAKENFTLLESSRDVFNQA
ILASCIFM
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgacgcagggattatccgtacttgaaaacatggatcaatggatagtgcggggttggtta
agccagttgaacagagctttcgtccgttttctgctcgatcaggatcagaatgcgagcgat
gccgtcctgtgggccggggctctggtcagtcaccagctggatcgaggtgaagtgtatctg
gatttagaaaaactctgtcaacagcctggcttaacgctggccattccgaccgatgatgcc
tggaaagtcgagcatgaattggcaaaccgcgagttatcggcgctgcaagcatttaatttg
gaacattggctatcggcgctgaaacaatcgaagctggttgcgttggggcagggcagcaca
cctttggttttggaaggggggcgtttatatttacggcgttactggcactatcaacaaacc
ctgaatacgagtatccaacaacgcttgcggccaatccgagagcatttgcccgtcgcgttg
cgcgatcaattaacagacttgtttcctgctatccctgaaacagctgaaaactcaaagatc
ccagattggcaaaaaatcgcctgtgtgttggctttgcgttcgcggtttaccatcgttacc
ggaggaccgggtaccggtaaaaccacgacgttgacgaagctcttagcactattgattaac
ctaacccaatacgaatcaaaccatacgaaaaagctgaatattttattagccgcacccacc
ggcaaagcggccgctagggtcagtgaatccattggcaaggcgctggatcatctaaacgtc
agtgaggacatcaaacaagccatccccaagaaagccagcacgttgcatcgcttgctagga
agccggcacgactctcggcgatttattcatcatcgagataatcccatcgtcgcggatatt
gtggttgtcgatgagggctcgatgatagatctggaaatgatggcctcgttgctggatgcg
ctaccggatactgcccaattaatattgctgggcgacaaggatcaattggcgtcggtcgaa
gccggttctgtgatgggggatttatgctttggcgccgaaaacagtgcctacgacgagtcg
acacgggcatggattaaccagtatgcaggtgagctgttagatgcgcccacagttaccggt
tcggcgatcaaccaacaaaccatcatgcttcggtatagccaccggtttaatgaactcagt
ggtattggccagctggccaaagcggtgaatctagggaatgccgagcaagcccaagccgtc
ttaaataatctaagtacctatgcggatttaatacctgaaccgcgtacagagtatttaaag
ctgagagaacagcctaatccggatgcggcaaaccgcttgttaaaaaaactggtgaccttg
aatgccggcgtcaatgacaacggcaaacccaatgatcgtcaaggctatggctattatctg
gcagtgatcgaggaaaatcgtcctgccgataacacccaatacgatgactgggctaaacaa
gtgctggtagcctttgatacctttcaggtgctctgcgctctgcgccgtggcgtgtgggga
atagaagagctcaatcagcgcatcgaagactggttgtttccacaacaaaaaaccagcctt
tggtatgaaggccgtcccgtcatggtgactcggaatgattacaatttgggcctgatgaac
ggcgatatcggcattgcccttaaagacagcaacgggaaactgagggtggcatttccaaac
gacgatcccttggctgacatcaagatacgctggatatcgccgatgcggctgccggatgtg
gaaaccgcttttgccatcacggttcataaatcccaaggctcggagtttagtcacgttgcc
ttggtgctgcctgaaaacagaagtcctgttattacccgtgaactgatctatacgggcatc
acccgagcgaaagaaaacttcaccttgctggaaagtagtagggatgtgtttaatcaagca
attttggcatcttgcatttttatgtaa
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