Methylomonas sp. DH-1: AYM39_21790
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Entry
AYM39_21790 CDS
T04396
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
mdh
Methylomonas sp. DH-1
Pathway
mdh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mdh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
AYM39_21790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mdh03400
]
AYM39_21790
Enzymes [BR:
mdh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
AYM39_21790
DNA repair and recombination proteins [BR:
mdh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AYM39_21790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_30
AAA_25
ResIII
MinC_N
Motif
Other DBs
NCBI-ProteinID:
ANE57930
UniProt:
A0A172UF05
LinkDB
All DBs
Position
unnamed:complement(54545..58258)
Genome browser
AA seq
1237 aa
AA seq
DB search
MSTAIALNPVTFPLSGTRLIEASAGTGKTYTIAALYVRLILGHQPDDSLPRRELLPPEIL
VVTFTEASTKELRERIRERLSQVARFFREKPVKSDAFLEAIRADYDPALWPACARRLELA
ANWMDEAAVYTIHSWCNRMLQQHAFDSGSLFHQEVNTDDTELLNEVVRDYWRTFYYEMAH
DDPDFLALYGLFQQPDNLLGEIRSLLNNADPIPDCLTPDQDIKTLMTAVNTAKQEALQLL
KQPWGVWADEIKALVETAVKNKVLPGVNYKSNSIQSWIGKIATWSSDPNQESLDLLTGFK
SLSPAGMANLAKSGQTPPVHPGFEAISRLPGQLAALPNLKIELIKHAIHWIRNRYDSEKQ
RVARMTFDDMLTRLDQALQGNNGQRLASVIRQQYPIALIDEFQDTDPVQYRIFSTLYPAE
GNAELGCLMIGDPKQAIYSFRGADIYTYLRAHQDTEGKHYTLGTNYRSTQHLVDAVNQVF
LYADQQPNGAFRFKRENDNPLPFIAVAAQGREDEWVINDLAAPALTLWHWDITDADGQLK
PVGLPEYRQTMAEVTASEIVGLLNLATQGRTGFKSSKKLKSLQPSDIAILVRSGAEAKVM
RNALARRQLRSVYLSERDSIFASREAKDLLLWLKALAEPRNERKVRTALSTATFGWSYQA
LQQLAIDEPGWEEQLERFLGYQARWQQDGILPTLRQLMSDYGLHARLTADSEGERCITNL
LHLAELLQQASGQLEGEQALIRYLAEAIEAESSQSGDEGIIRLESDANLIKIVTIHKSKG
LEYPLVFLPFICSFREINSRFNTHYRYHDEQQILNIDLTKADDIRALSDEERLQEDLRLL
YVAMTRAQHACWLGIAPIKFGNTKECQLEKSAMGSLLNWQAGLSVGALGSQLTHLKGHCE
SILLTGLPTINDELYLAPQQTEQLESTRTAAARIANNWWVASYSALQIEETQLIQEEQPP
LPQELETARDDKQNDEADLNLAPTLKPLAGIHGLARGSGPGVLIHDLLEQCAQLGFSTVQ
ANPALGQQLIQKGFTASEWTHKQEIIASALSVWLSMPLLEGENLSLAQLGADDYQAEMEF
LLGADAVNVQALDQLVTRHTFAGLPRPSLLPRFVNGLLKGFMDLVFVYQQQYYVVDYKFN
SLGNDDASYTQEALEQAMLSKRYDLQYSLYLLALHRLLKVRLGEQYDYDTHIGGGLYLFL
RGSQSPSGGRLLTKPPRELIEGLDKLFSASTLNGDTL
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
atgagtacggctattgcgttaaatccggtgacgtttcccttgtccgggacccgcttgatt
gaggccagcgccgggacgggtaagacttataccattgcggcactctatgtgcgcttgata
ctggggcatcaacccgacgactcacttccgaggcgtgagttattgccaccggaaattctg
gtggtcacgtttactgaagcttcgactaaagagttgcgcgaacggattcgagagcgtctt
agccaggtcgcgcgttttttccgtgagaaaccggtgaaaagcgatgcctttctggaagcc
atccgcgcggattatgatccggctctctggccagcctgtgcccggcgtctggaactggcc
gccaactggatggacgaagcggctgtctataccatccatagctggtgtaatcgcatgttg
caacaacatgcgttcgatagtggcagcctgtttcatcaggaggtcaataccgacgatacc
gaactgttgaacgaagtggttagagattattggcgcacgttctattacgaaatggcgcac
gacgacccggactttctggcgctctatggcctttttcagcaaccggataacttactcggg
gaaattcgatcgctgttaaataacgccgatccaattccagactgcctgacgcccgatcaa
gacatcaaaaccttgatgaccgcagtcaataccgccaaacaagaggctttgcaattactc
aagcagccctggggagtatgggcagatgaaattaaagcgttagtggaaacagcagttaaa
aacaaagtactgcctggcgtaaactataagtccaattccattcagagctggatcggtaaa
atagcaacctggagttctgatccaaatcaggaatcgcttgatcttctaacgggttttaaa
agcctttcgccggccggtatggcaaacctcgccaaatcgggtcaaacgccacccgtgcat
cccggctttgaggcgattagccgattaccggggcaactcgcggcattaccgaatttaaaa
atcgaactgatcaaacacgccatccactggattcgcaaccgttacgacagtgaaaagcaa
cgtgtggcgcggatgacgttcgatgacatgctgacccgccttgatcaagccctgcaaggc
aacaacggtcagcgcttggcaagcgtgattcggcagcaataccccatcgccttaatcgat
gagtttcaggataccgacccggttcaataccgtattttttccaccctgtatccggcagag
ggcaatgctgagttgggctgcttgatgataggcgatcctaaacaagcgatctactcgttc
cggggggccgatatttatacctatctcagggcgcatcaagatacggaggggaagcattac
acgctaggcactaactaccgctctacccaacatctggtggacgcggtgaatcaggtcttt
ctatatgccgatcagcagcccaacggggcttttcggttcaaacgcgagaatgataatccc
ttgccgttcattgctgtggccgcccagggccgtgaggatgaatgggtcatcaacgatctg
gcggcgccggccttaacgctctggcattgggatatcaccgatgccgatggccagctaaag
cccgtgggactgccggaatatcggcaaaccatggccgaggtgacggccagcgagattgtg
ggcttgctgaatttggcgacgcaaggccgtaccggttttaaatcatcaaaaaagttaaag
tccttacaaccttcggatattgcgattttagtcagaagcggcgccgaagccaaagtgatg
cgaaacgcactggccagacgccaattgcgtagtgtttatctgtccgagcgcgactcgatc
tttgccagccgtgaggcgaaagacctgttgctgtggctgaaagcgctcgccgaaccgcgt
aatgaacgcaaggtgcgcaccgcgttaagtaccgccacctttggttggtcttatcaagcg
ctgcagcaactggcgatagatgagccaggttgggaagagcaattggaacgtttcctgggt
tatcaggcgcgctggcaacaggatggtattttgccgaccttgcggcaactgatgagcgat
tatggcttgcatgcgcggctcaccgcggacagtgaaggcgaacgctgcatcactaatcta
ttgcatctggcggagcttctgcaacaagccagcggccagctcgaaggcgagcaggcttta
atccgttatctggcggaggctatcgaagccgagagtagtcaatccggcgacgaaggtatt
atccgtctggaaagcgatgccaatctgatcaaaatcgtcaccatccataaatccaagggc
cttgagtatcccttggtgtttctgccttttatatgcagctttcgggaaatcaacagccga
ttcaatacccactaccgctatcacgatgaacagcaaatcctcaacatcgatttgacgaag
gcggatgacattagggcgttaagcgatgaagaacgcctgcaggaagacttgcgcttactg
tatgtcgccatgactcgagcgcaacatgcctgctggttagggatagcgccgattaaattc
ggcaataccaaggaatgccagctggaaaaatccgccatgggttcgctgttgaactggcaa
gccggactgtccgtcggcgcgttgggttcacaactgacgcacctgaaaggccattgcgag
tccatcctgctgaccggcttacccaccatcaacgatgagctttaccttgccccgcaacaa
acggagcaattggaatccacgcgcactgccgccgccagaattgccaataattggtgggtg
gcaagctatagcgccctgcaaattgaagagactcagttgatccaggaggagcaaccgcct
ctgccgcaagaactggaaaccgcccgggacgataaacaaaatgatgaagcggacctgaat
ctcgcgccgacgctaaagccactggccggcattcacggtttagcccgaggctcagggcct
ggggtgttgattcatgacctgctggagcaatgcgcacaattaggtttttcgactgtgcag
gccaatccggcgctaggccaacaattaatccaaaagggctttaccgccagtgaatggact
cacaaacaagagattattgcctcggcattatcggtctggttaagcatgcccttgttggaa
ggtgaaaatctgagtttggctcaactgggtgccgatgactatcaggctgaaatggagttt
ctgctgggggcggacgccgtcaatgttcaagccttagaccagctggtgacccgacatacc
tttgcagggcttccccggccgagtttgctgccgagattcgtcaacggcttattaaaaggc
tttatggatttggtgtttgtgtatcagcagcaatattacgtggtggattacaagtttaat
agcctgggcaatgatgatgcgagttatacgcaggaggctcttgaacaggcgatgctgtca
aaacgctacgatttgcaatattcactctatttactggcgttgcatcgtttgctgaaggtt
cggctgggtgaacagtacgattacgatacgcatatcggcggcggactgtacttatttctg
cgtggatcgcaaagcccaagcggtggccggctgttgactaaaccgccgcgtgaactcatc
gagggcctggataaactgttttcggcatcgacgctgaatggagacacactatga
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