Methylorubrum extorquens DM4: METDI0009
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Entry
METDI0009 CDS
T00947
Symbol
recD
Name
(GenBank) Helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
mdi
Methylorubrum extorquens DM4
Pathway
mdi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mdi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
METDI0009 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mdi03400
]
METDI0009 (recD)
Enzymes [BR:
mdi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
METDI0009 (recD)
DNA repair and recombination proteins [BR:
mdi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
METDI0009 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
SH3_13
OB_YrrC
UvrD_C_2
HHH_5
AAA_11
Viral_helicase1
Helicase_RecD
HHH_2
AAA_29
AAA_22
HHH_3
nSTAND3
AAA_16
PIF1
UvrD-helicase
TrwB_AAD_bind
MeaB
DEAD
AAA
AAA_28
NTPase_1
CbiA
HHH
AAA_24
Motif
Other DBs
NCBI-ProteinID:
CAX21689
UniProt:
C7C6G5
LinkDB
All DBs
Position
8968..11169
Genome browser
AA seq
733 aa
AA seq
DB search
MNTSVRPGDLDGSTPLDMLAGSVERVTFHSAETGFCVLKVHARGRRDLVPVVGHAPAIAA
GEWLTASGRWVTDREHGLQFRADTLQVTPPTGIEGIERYLASGQMRGIGPMMAKRIVARF
GEAVFEIIEAEPARLTEVEGIGRKRAARIVKGWAEQKAVREIMIFLHAHGVGTARATRIF
RTYGGDSLKVMAEDPYRLARDIRGIGFRTADAIALRLGLARDAPQRLAAGVSYALQTAMD
EGHCGLPVERLVRLAAELLDVAPDLIRLAAALVLREGREVVADTLRGEPCLFLKGLHGAE
RVIAMQLAERAAGPPPWAAIDFALARPWVEAKTGKTLSASQAEAVGLVLRSKLCVLTGGP
GVGKTSTLDAILRILTAKGVRVLLAAPTGRAAKRMAEQTGLDARTLHRLLEIDPRNGGFQ
RNEDNPLDCDLLVIDETSMVDVPLMHALLKAVPERAGLILVGDVDQLPSVGPGQVLADVI
ASGTVPVARLTEIFRQAAQSRIVVNAHNINTGRMPAAPAKGEDSDFYLVEIEDADEGVET
LIELVTRRIPRRFGLNPTRDIQVLTPMIRGSLGSRNLNNALQRVLNPSPSAEVERFGWRF
APGDRVMETRNDYDRDVFNGDLGTISAIDAEDEALVVDFDGRAVIYPFNELDTLVPAFAT
TIHKAQGSEYPAVVIPVVTQHRTMLARNLLYTGVTRGRRLVVLIGQRRALAMAVREGASR
RRWTKLREWLDAA
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgaacacctcagtccgtcccggcgacctcgatggcagtacgcccctcgacatgctcgcc
ggctcggtcgagcgggtgacgttccacagcgccgagaccggcttctgcgtcctcaaggtc
catgcccgcggccggcgcgacctcgtaccggtggtgggtcacgcgcccgccatcgccgcg
ggcgagtggctgaccgcttccgggcgatgggtcaccgaccgtgagcacggcctccagttc
cgcgccgacacgcttcaggtgacaccgccgaccgggatcgagggcatcgagcgctacctc
gcctccgggcagatgcgcggcatcggcccgatgatggccaagcgcatcgtcgcccgcttc
ggggaggcggtgttcgagatcatcgaggccgagcccgcccgcctcaccgaggtcgagggg
atcggccgcaagcgcgccgcgcgcatcgtcaagggctgggccgagcagaaggccgtgcgg
gagatcatgatcttcctgcacgcccacggcgtcggcaccgcacgggcgacccggatcttc
cgcacctatggcggggattccttgaaggtcatggccgaggacccctatcggctcgcccgc
gacatccgcggcatcggcttccgcacggcggacgccattgccctgcgcctcggcctcgcc
cgcgacgcgccgcagcggctcgctgccggtgtctcctacgcgctccagacggcgatggat
gagggccattgcggcctgcccgtcgagcggctggtgcgtctcgccgccgagcttctcgac
gtcgcgcccgatctcatccggctcgccgcggcgctcgtcctgcgcgagggccgggaggtc
gtcgcggatacgctgcgcggcgagccctgcctgttcctcaagggcctgcacggcgccgag
cgcgtcatcgcgatgcagctggccgagcgcgccgccggcccgccaccctgggccgcgatc
gacttcgcgctggccaggccctgggtcgaggcgaagaccggaaagacgctgtccgcctcg
caggccgaggcggtcgggctggtgctccgctcgaagctctgcgttctcaccggcggcccc
ggcgtcggcaagaccagcaccctcgatgcgatcctgcgcatcctcaccgccaagggcgtg
cgggtgctgctcgccgcccccaccggccgcgcggccaagcgcatggccgagcagaccggg
ctggacgcacgcaccctccaccgcctgctggagatcgacccgcgcaacggcggctttcag
cgcaacgaggacaacccgctcgattgcgatctcctcgtcatcgacgagacctcgatggtc
gacgtgccgctgatgcatgcactgctcaaggcggtgccggagcgggcgggcctgatcctc
gtcggcgatgtcgatcagcttccgtcggtcggacccggacaggtgctggccgacgtgatt
gcctccggaaccgtgccggtggcgcgcctcaccgagatttttcgccaagcggcgcagagc
cggatcgtcgtcaatgcccacaacatcaacaccgggcggatgccggccgcgcccgccaag
ggcgaggacagcgacttctacctcgtcgagatcgaggacgcggacgagggcgtggagacg
ctgatcgaactcgtcacccgccgcatcccacgccgcttcggtcttaatcccacccgcgac
atccaagtgctgacgccgatgatccgcggctcgctcggcagccgcaacctcaacaacgcc
cttcagcgcgtcttgaatccgtcgccctcggcggaggtcgaacgcttcggctggcgcttt
gcgcccggcgaccgggtgatggagacccgcaacgactacgaccgcgacgtgttcaacggc
gacctcggcacgatcagcgccatcgatgcggaggacgaagcgctcgtggtcgatttcgac
ggtcgtgcggtgatctaccccttcaacgaactcgacacgctggtgccggccttcgccacg
acgatccacaaggcacagggctcggaatatccggccgtggtgatcccggtggtgacccag
caccgcacgatgctggcgcgcaacctgctctataccggcgtcacccgcgggcgccgcctc
gtcgtgctgatcggccagcgccgggcccttgcgatggcggtccgcgaaggcgcctcgcgg
cggcgctggaccaagctgcgggagtggctggacgccgcctga
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