Methylorubrum extorquens DM4: METDI0178
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Entry
METDI0178 CDS
T00947
Symbol
sbcD
Name
(GenBank) ATP-dependent dsDNA exonuclease
KO
K03547
DNA repair protein SbcD/Mre11
Organism
mdi
Methylorubrum extorquens DM4
Brite
KEGG Orthology (KO) [BR:
mdi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mdi03400
]
METDI0178 (sbcD)
DNA repair and recombination proteins [BR:
mdi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
METDI0178 (sbcD)
Archaeal homologous recombinant proteins
METDI0178 (sbcD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Metallophos
SbcD_C
Motif
Other DBs
NCBI-ProteinID:
CAX21847
UniProt:
C7C6U3
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All DBs
Position
177960..179207
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AA seq
415 aa
AA seq
DB search
MIRVLHTGDWHIGQTLRGFSREREHDAVFGCLESIVVEREVDALVVAGDVFDSQNPSGES
QARFYTLMARLHAARPAMTIVITAGNHDAAGRLEAPRPLLEAIGVHVVGNVRRRDGAIDL
DRHLVPVRSANGEVAAQVLAVSYPTAACLPPLSSLGQQPRIGETSPIVRAVRDLYGQLFE
AARPRLAGLPLLVTGHLHVAGGLESEGAERRILVGGEHAVPSDVFPEEARYVALGHLHRA
QVLGRGQVRYCGSLIPLSAAEQPYRHGVTLVTLGAGAAEIEHIAIPRPVPFLRLPASGDM
PLADLGDHLAALALDPDLPMEARPYIQVRLAREGLLPGYRAEVDRIGESFPVRVVDVRVT
VPPRAAIAIEESEAPPPRLSERDPEELFRLAYRAKWDEDPEPAHLDVFHRARAEA
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
gtgatccgcgttctccatacgggcgactggcatatcggccagacgctgcgcggcttctcg
cgcgaacgcgagcacgacgcggtgttcggttgtctcgagagcatcgtcgtggagcgcgag
gtcgatgccctcgtcgtggccggcgacgtcttcgacagccagaacccgtccggcgagtcg
caggcccgcttctacaccttgatggcgcgcctccacgcggcgcggccggccatgaccatc
gtcatcaccgccggcaatcacgatgccgccgggcggctggaagcaccgcgcccgctgctc
gaagccatcggcgtccacgtcgtcggcaatgtccgccgccgcgacggcgcgatcgacctc
gaccggcacctcgtgccggttcgctcggccaacggggaggttgccgcgcaggtgctcgcc
gtctcctatcccaccgccgcctgcctgcccccgctctcgtcgctcggccagcagccccgc
atcggtgagacgtcgccgatcgtgcgggcggtgcgcgacctctacggccaactcttcgag
gcggcccggccgcggctcgctggcctgccgctcctcgtcaccggccatctccatgtggcc
ggcggactcgaatcggagggggcggagcggcgcatcctcgtcggcggcgagcatgccgta
ccgtccgacgtgtttccggaggaggcgcgctacgtggcgctcggccatcttcaccgggcg
caggtgctgggccggggacaagtgcgctattgcggctcgctgatcccgctctcggcggcc
gagcagccctaccgccacggggtcaccctggtgacgcttggcgcgggcgcggctgagatc
gagcatatcgccatcccccgccccgtaccgttcctgcgcctgccggcatcgggcgacatg
ccgctggccgatcttggtgatcatctcgccgcccttgcgctcgaccccgatcttccgatg
gaggcgcggccctacatccaggtgcggctcgcccgcgagggattgctgcccggctaccgc
gccgaggtggaccgcatcggcgagagctttccggtgcgcgtggtcgatgtgcgggtgacg
gtgccgccgcgggccgcgatcgcgatcgaggaatccgaagcaccgccgccgcgcctgtcc
gaacgcgatccggaagagctgttccgcctcgcctaccgcgccaagtgggacgaggacccc
gagcccgcccatctcgacgtgttccaccgcgcacgagcggaagcctga
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