Methylorubrum extorquens DM4: METDI0179
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Entry
METDI0179 CDS
T00947
Symbol
sbcC
Name
(GenBank) Nuclease sbcCD subunit C
KO
K03546
DNA repair protein SbcC/Rad50
Organism
mdi
Methylorubrum extorquens DM4
Brite
KEGG Orthology (KO) [BR:
mdi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mdi03400
]
METDI0179 (sbcC)
DNA repair and recombination proteins [BR:
mdi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
METDI0179 (sbcC)
Archaeal homologous recombinant proteins
METDI0179 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
ABC_tran
AAA_21
nSTAND3
AAA_22
DUF87
Motif
Other DBs
NCBI-ProteinID:
CAX21848
UniProt:
C7C6U4
LinkDB
All DBs
Position
179219..182965
Genome browser
AA seq
1248 aa
AA seq
DB search
MRILAIRGENLASLAAPFAVDLAAEPLGATGLFAITGETGAGKSTILDALCLALYGRYPR
VAVSRREDVPDPGGEALSASDGRAILRRGAGSGYAEVDFIGQDGVAYRVGWEAFRARNRA
TGKLQAERRRLHRLDDGSAVAAGKTQVLDRVVALTDLTFDQFRRTVLLAQGEFDAFLLAA
EGERAELLEKITGTAIYSEISKRVHLGFEEHRRAVEALELRRGEIGLLDAEGLSSRNAER
EALRAGLETWRGEQAAVGRILETARRIEAARTALAEAERRAVSAGESLDAAGPDRARLAE
LDAVEPLRGRAEALGETARERGEAQARVEATAARVRDARAAAAAAEAKRAEANAGDEAAE
TVFKSFGPLWDRAAALDATIAIAEQEAAAAAQVALRSNEAAAAADAALTAIERRLDEARA
ARDAAARQLEADRSHAPLAERGDDFARRIRERARLQEQAEAAGKEGVARRSEIAGCDGEA
EAGTARLAAFRARRETLAGARAEREAALAALAEPAAQARSAAFEGLLDALREAYALAGRH
GTALADRAAATEAEAEAGLVATEAAARYGVEDQALHEAGIRRAEIAPLAELAEESVSREA
ARLRSLLVAGGPCPVCGSSDHPHAHESDGALGRLAEEMRTRRAELDVRIGEHQAARDRAR
GDFAAAEGRRDDAQERAAAAAEAAAATAARYRATLPGLLASLEAAGLKAVLPPGPDAPAL
AAAGTTARAERDATLHVLATARTLRGEIDGLIRERDAAEARAEAEARALDALTRRRTEAG
LAAERAESMRAALIQRVAELADEIAPALSAADLSLADLDRAPEMCADRVSRLGQAYAALR
TRLAGLEAQLGALAPERAAAASSREAETRAAVKARAEAEERQTRLKQARAERAGLLGGEP
TGTHRTRLNNERRAAREALQAAQTVCAEAARALTGAVTDEAGAIAASERAAARHKAAEDA
FAQACGERGREAVAALLAVPTETRDAMRAGLDRLEREAAETRTALATRRTDVEALDTESG
IDVAAAEAETTRIAEAMAQAQQRLGALDAELRRDEAARAKAADLAGEIEAATAELTTWHR
VEEAIGSAGGDRFRRFAQGVTLDHLVHLANEQLRALSPRYRLARSVGADLALHVVDRDMG
DERRATRSLSGGERFLVSLALALALSGLEGRQSFVDTLFIDEGFGSLDAETLDLAVDALE
TLQGRGRKVGVITHVAGMMERIAVQIRVEKRGSGRSVVRVVDRGAAIV
NT seq
3747 nt
NT seq
+upstream
nt +downstream
nt
atgcgcatcctcgcgatccgcggcgagaacctcgcgagcctcgccgcgcccttcgcggtc
gatctcgcggccgagccgctcggcgccaccggcctgttcgccatcaccggcgagaccggc
gccggcaagtccaccatcctcgacgcgctctgcctcgcgctctacggccgctatccccgc
gtcgccgtgagccgccgggaggacgtgcccgatcccggtggcgaggcgctgagcgccagc
gacgggcgggcgatcctgcgccggggcgcgggctcagggtatgccgaggtcgatttcatc
ggccaggacggcgtcgcctaccgcgtcggctgggaggcatttcgcgcccgcaaccgggcg
accggaaagcttcaggcggagcggcggcgcctgcaccggctcgacgatggcagcgccgtc
gccgcgggcaagacgcaggtgctcgaccgggtggtcgcgctgaccgacctgaccttcgac
cagttccgccgcacggtgctgctggcgcagggcgagttcgatgccttcctcctcgcagcg
gaaggcgagcgggccgagctgctggagaagatcaccggcacggcgatctattccgagatc
tcgaagcgggtgcatctcggcttcgaggagcaccgccgcgcggtcgaggccctggagctc
cgccgcggcgagatcggtctgctcgatgcggagggcctgtcgagccgcaacgccgagcgc
gaggctctgcgcgccgggctggagacctggcgcggcgagcaggccgcggtcggccgcatc
ctcgagacagcccgccggatcgaggccgcgcgcacggcgctcgcggaggccgaacggcgc
gcggtgtcggcgggtgaaagcctggacgcggccgggccggaccgggcgcggcttgccgaa
ctcgacgcggtcgagccgctgcgcggacgggccgaggccttgggcgagaccgcccgcgag
cgcggcgaggcgcaggcacgggtcgaggcgaccgctgcccgcgtccgagacgcccgcgcc
gccgccgcggcggccgaggcgaagcgggctgaggcgaatgcgggggacgaggcggcggaa
accgtcttcaagagcttcgggccactttgggaccgagccgccgcgctcgacgcgaccatt
gccatcgccgagcaggaagccgcggctgccgcgcaggtggccctccgatcgaacgaagca
gcggcagcggcggatgccgcgcttaccgcgatcgagcgtcgcctcgacgaggcgcgggcg
gcacgcgacgccgcggcccgccagctcgaggccgaccgcagccatgcgccgctggccgaa
cgcggcgacgatttcgcccggcgcatccgtgagcgggcgcggctgcaggagcaagcggag
gcggccgggaaggaaggcgtggcgcggcggtccgagattgccggctgcgacggtgaagcg
gaagccggcacggcccgcctcgccgcgttccgcgcgcgccgagagacgttggccggcgct
cgcgcggaacgcgaggccgcactcgcagcgctcgccgagcccgccgcgcaggcgcgcagc
gccgctttcgaagggctgctcgatgccctgcgcgaggcctacgccctggccggacgccac
ggcacggcactcgccgaccgggccgccgccacggaggccgaggcggaagccggcctggtc
gcgaccgaggccgccgcgcgctacggggtggaagaccaagcgttgcacgaggccgggatc
cgccgcgccgagatcgcgccccttgccgaactggccgaggaaagcgtctcgcgcgaggcc
gcccgcctgcgcagcctgctcgttgccggcgggccctgccctgtctgcggcagctccgac
catccccacgcccacgaatccgacggcgcgctcggccgcctcgccgaggagatgcggacc
cgtcgggccgaactcgatgtgcggatcggcgaacaccaggccgcccgcgatcgcgcccgc
ggtgatttcgcggcagcggagggccggcgcgacgacgcccaggagcgcgccgccgccgcg
gctgaggcggcggcggccaccgctgcccgctatcgcgccacgctgcccggtctcctggcc
tcgctcgaagcggcggggctcaaggccgtgctgccgccggggcctgatgcgccagcgctg
gccgcggccgggacgaccgcccgggccgaacgcgacgccacgctgcatgtgcttgccacc
gcgcggacgctgcgcggcgagatcgacgggctgatccgcgaacgcgacgcggcggaggcg
cgggccgaagcggaggcccgcgcgctcgacgccctcacccggcgccggaccgaggccgga
ctcgcggccgagcgcgcggagagcatgcgggccgccctcatccagcgcgtggcggagctg
gcagacgagatcgcccccgccctgagcgccgccgatctgagtctggccgatctcgatcgg
gcgccggagatgtgcgccgaccgtgtctcgaggctcgggcaggcttacgcagcgttgcgc
acccggctagccggcctggaggcgcaactcggcgccctggcgcccgaacgggccgccgcc
gcatcctcgcgggaggccgagacgcgggccgccgtgaaggcccgcgcggaggccgaggaa
cggcagacccgtctgaagcaggcccgtgcggaacgcgccggcctcctcggtggcgaaccg
accggcacccaccgcacccggctcaacaacgagcgccgcgccgcccgcgaagccctccag
gccgcgcagaccgtgtgtgccgaagccgcccgtgcgttgaccggtgccgtcaccgacgag
gccggtgccatcgcggcctcggagcgtgccgccgcacgccacaaagcggccgaggacgcc
ttcgcgcaggcctgcggtgagcgcgggcgcgaggcggtggccgcgctgcttgccgtgccg
accgagacccgagacgcgatgcgggccggcctcgaccgactggagcgcgaggctgctgaa
acgcgaaccgccctcgccacccgccgcacggatgtcgaagctctggacaccgagtccggg
atcgacgttgccgccgctgaggccgagacgacccggatcgccgaagccatggcgcaggcc
cagcaacgccttggcgccctcgatgcggagttgcgccgggacgaggccgcccgcgccaag
gccgctgacctcgcaggggagatcgaggcggccacggccgagctgacgacctggcaccgg
gtcgaggaggccatcggctcggcgggcggcgaccgcttccgccgttttgcgcaaggggtg
accctcgatcacctcgtgcatctcgcgaacgaacagctccgggcactcagcccccgctac
cgccttgcccgcagcgtcggcgccgacctcgccctgcatgtggtggaccgcgacatgggc
gacgagcgccgggcgacccgtagcctgtcgggcggcgagcgcttcctcgtctcgctggcg
ctggcgctggcgctgtcgggcctggaagggcggcaatccttcgtcgacaccctgttcatc
gacgagggcttcggctcgctcgacgccgagaccctcgatctagccgtcgatgccctcgaa
acgctccagggccgcggccgcaaggtcggcgtcatcacacacgtcgccggaatgatggaa
cgcatcgccgtgcagatccgggtggagaagcgcggcagcggccgcagcgtggtccgggtg
gtggatcgcggcgctgccatcgtttga
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