Methylorubrum extorquens DM4: METDI1484
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Entry
METDI1484 CDS
T00947
Symbol
priA
Name
(GenBank) Primosome factor N' (replication factor Y)
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mdi
Methylorubrum extorquens DM4
Pathway
mdi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mdi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
METDI1484 (priA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mdi03400
]
METDI1484 (priA)
Enzymes [BR:
mdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
METDI1484 (priA)
DNA repair and recombination proteins [BR:
mdi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
METDI1484 (priA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
PriA_3primeBD
PriA_C
ResIII
Zn_ribbon_PriA
Helicase_C
AAA_19
zf-CHY
TrwB_AAD_bind
Motif
Other DBs
NCBI-ProteinID:
CAX23086
UniProt:
C7CG10
LinkDB
All DBs
Position
1344836..1347013
Genome browser
AA seq
725 aa
AA seq
DB search
MPAVAEILIPLALDTAYSYAVPAGLTLAEGDIVQVPLGPRETIGVVWGLDERASGGNLRP
VTGKIEAPPLSESLRKLVDWLARYTLAPKGSALAMALRLPDEAARNEAPRVGVRAAGKPP
TRQTVARGKVMAVAADNAVRGKSALAKEAGVSLSVVDGLIDDGALETVALMPEPVALPPD
PDHPRVPLSDAQAEAAHALIANAPSPTDAATGETILLEGVTGSGKTEVYFEAVAECVRQG
RQALVLMPEIALTAQFLDRFAGRFGVRPATWHSGIGGKRRERLRAGVAAGEVSVVVGARS
ALFLPFRNLGLIVVDEEHESAYKQEDGVHYHARDMAVVRGKIEGCPVVLASATPSIESRV
NAQSGRYRHVVLPGRFGGRPMPDIAAIDMRLDKPERGRFLSPPMVNAVKSTLAAGDQALL
FLNRRGYAPLTLCRACGHRYQCRNCSTWLVEHRFRRALVCHQCGYAERKPEACTECGAFD
HLTPCGPGVERIAEEVTELFPEQRIVVLSSDFPGGAERLRQELETVAAGDCDIVVGTQLV
AKGHNFPHLTLVGVLDADIGLTSGDPRAAERTFQLLQQVTGRAGRGERPGRALVQTYQPE
HPVIAALLSGDADRFYEEEIWAREAAGLPPFGRLAALIVSGEEREKAEAHGQALARVAEP
PPGVSVLGPAEAPLALIRGRWRFRLLVKTERGIDVQSYLRDWLARGPKPRGNLKVAIDVD
PQSFL
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgcctgccgtcgccgaaatcctgatcccgctcgcgctcgacaccgcctacagctacgcg
gtgccggccgggctgaccctcgccgagggcgacatcgtgcaggtgccgttgggtccgcgc
gagacgatcggcgtggtctgggggctcgacgagcgggcctcggggggaaacctgcggccg
gtgacgggcaagatcgaggcgccgccgctctcggagtctttgcgcaagctggtcgattgg
ctcgcgcgctacaccctggcgccgaagggttcggcgctcgccatggccctgcgcctgccc
gacgaagccgcccgcaacgaggcgccgcgggtcggtgtgcgcgccgccggcaagccgccg
acccggcagacggtcgcccgcggcaaggtgatggctgtcgccgccgacaacgcggtacgg
ggcaagagcgcgctcgccaaggaggccggggtctcgctcagcgtggtcgatggactgatc
gatgacggcgcgctggagaccgtggcgctgatgcccgagcccgtggcgctgccgccggac
ccggaccatccgcgggtgccgctgtccgacgcgcaggcggaggcggcgcacgcgttgatc
gcgaacgccccttcccccaccgatgctgcgaccggtgagacgatcctcctcgaaggcgtc
accggctcgggcaagaccgaggtctatttcgaggcggtggccgagtgcgtgcggcagggg
cggcaggccctggtgctgatgccggaaatcgcgctgacggcgcagtttctcgaccggttc
gccgggcgcttcggggtgcggccggcgacctggcattccggaatcggcggcaagcgccgc
gagcggctgcgggcgggtgtggccgcgggcgaagtctcggtggtggtcggcgcccgctcg
gccctgttcctgccgttccggaatctcggcctgatcgtcgtcgatgaggagcacgaatcc
gcctacaagcaggaggatggcgtccactatcacgcccgcgacatggcggtggtacgcggc
aagatcgagggctgcccggtggtgctcgcctcggccacgccgtcgatcgagtcgcgggtc
aacgcgcagagcgggcgctaccgccacgtcgtgctccctggccgcttcggcgggcggccg
atgcccgacatcgcggccatcgacatgcgcctcgacaagccggagcgcgggcgcttcctg
tcgccgccgatggtgaacgcggtcaagagtacgctggccgcgggtgatcaggcgctgctg
ttcctcaaccgccggggctacgcgccgctcaccctgtgccgggcctgcggccaccgctat
cagtgccgcaactgctcgacctggctcgtggagcaccgcttccgccgcgcgctggtctgc
caccaatgcggctacgctgagcgcaagccggaggcctgcaccgagtgcggcgccttcgat
cacctcacgccctgcgggccgggcgtcgagcggatcgccgaggaggtgaccgagctgttc
cccgaacagcgcatcgtcgtgctgtcgagcgactttcccggcggcgccgagcggctgcgc
caggaactggagacggtggcggcgggcgattgcgacatcgtcgtcggcacgcagctcgtg
gccaagggccacaacttcccgcacctgaccctcgtcggggtgctcgacgccgatatcggc
ctcacctccggcgatccgcgcgcggccgagcgcaccttccagctcctgcagcaggtgacg
gggcgtgcggggcgcggcgagcggccgggtcgggccctggtgcagacctaccagcccgag
catccggtcatcgccgccctgctctcgggggatgccgaccgcttctacgaggaagagatc
tgggcccgcgaggccgcggggcttccgccgttcggacggctcgcggcgctgatcgtctcc
ggggaagagcgggagaaggccgaggcgcacggtcaggcgcttgcacgcgtcgccgagccg
ccgcccggcgtctccgtcctcggcccggcggaggcgccgcttgccctgatccgcgggcgc
tggcgattccggctgctggtgaagaccgagcgcggcatcgacgtgcagagttatctgcgg
gattggctggcgcgcggaccgaagccgcggggtaacctcaaggtcgcaatcgacgtggac
ccgcagagcttcctataa
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