Methylorubrum extorquens DM4: METDI1528
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Entry
METDI1528 CDS
T00947
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
mdi
Methylorubrum extorquens DM4
Pathway
mdi03030
DNA replication
mdi03430
Mismatch repair
mdi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mdi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
METDI1528 (dnaE)
03430 Mismatch repair
METDI1528 (dnaE)
03440 Homologous recombination
METDI1528 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mdi03032
]
METDI1528 (dnaE)
03400 DNA repair and recombination proteins [BR:
mdi03400
]
METDI1528 (dnaE)
Enzymes [BR:
mdi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
METDI1528 (dnaE)
DNA replication proteins [BR:
mdi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
METDI1528 (dnaE)
DNA repair and recombination proteins [BR:
mdi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
METDI1528 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
DUF1707
T2SSK
Motif
Other DBs
NCBI-ProteinID:
CAX23125
UniProt:
C7CGM5
LinkDB
All DBs
Position
1391116..1394637
Genome browser
AA seq
1173 aa
AA seq
DB search
MTRVLKEVGFIHLHVHSSYSLLEGGVKAGDLVKAAAADRQPALALTDTNNLFGALEFSEY
AAKAGIQPIAGLQLTICFEAPDPMARLPQAGCANIVLLAQDETGYGNLLRLGSRAHFDGP
LGAAPNLAVSALEGNVEGLIGLTGGLSGPLDTSLRAGRVDQAARRLEILKGAFGEEHLYV
EIQRHGLDDERAVERELLRLADTNGLGIVATNEPFFAKPGDYDAHDALLAIAEGRLVSDE
RRRRLTPRHAFTTRAAMMELFRDLPDALSASVEIAMRCSYRARTRKPILPNFASVAAGEA
PPMADALAEAAQTPVQAVAADEPTELCRQAEAGLKLRLKQHGTAPGFTEEDYRARLKFEL
DVIVKMKFPGYFLIVSDFIKWAKDHDIPVGPGRGSGAGSLVAWSLLITDLDPLRFGLLFE
RFLNPERVSMPDFDIDFCVEGRERVIRYVQQRYGERQVGQIITFGTLLARGVLRDVGRVL
EMPYGQVDKLTKLVPQNPANPVTLAQAIEGEPKLQQAIEEEPIVARLIEISKKLEGLHRH
ASTHAAGVVIGDRPLEELVPLYRDPKTGMRVTQFNMKWVEQAGLVKFDFLGLKTLTMLRC
CTDLLKQRGIEVDLAQIPLDDKKTYEPMGRGETVAVFQVESAGMRKALCEMQADRLEDII
ALVALYRPGPMANIPVYCERKLGRDAGNEASWYSHPMLEPILKETFGIIVYQEQVMEVAK
VLAGYTLGEADMLRRAMGKKIKAEMDAQRDRFVKGCTENGLTKAKADEIFDLLAKFADYG
FNKSHAAAYALVTYQTAYLKANHPVEFLAAAMTLDIDNTDKLAEFRQDAQRLKITVEPPS
VNTSGVVFDVREGRILYALAAIKGVGRSAVESIVAARGDTPFKDLACFARRLNPRHVNKR
TLENLIAAGALDCIEPDRARAWAAVEPMMKMAQGAAEAETSGITDMFGGVASVDVALRIP
PHEFWTHTDKLKRECDAIGFFLSGHPLDEYGPILEKLRVQSWADFCRAVRAGTASVGRIA
ASVLDRSERRTKSGNKLGIVILSDQTGHFEAIIFSEGLNQYRDILEPGRPLVLTIQANLE
GEDVRARITTAEPLDQAAARHQKGMRIFLRDDRALSSVQQRLTLRGEGEVSLILILDGGE
REVEVRLKDRYQATPQVAGALRAVPGVVQVEVN
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgacgcgcgtgctgaaggaggtcggcttcatccacctccatgtccactcgtcctactcg
ctgctcgaaggcggggtgaaggcgggtgatctcgtcaaggcggccgcggccgatcggcag
cccgcgctcgcgctcaccgacaccaacaacctgttcggggcgctggaattctccgaatac
gccgccaaggcggggatccagccgatcgcgggcctgcagctcacgatctgcttcgaggcg
ccggacccgatggcgcgcctgccccaggccggctgcgccaacatcgtgctgctcgcccag
gacgagaccggctacggcaacctgctgcgtctgggcagccgggcgcatttcgacggtccg
ctcggtgccgcgcccaacctcgccgtctcggcactggagggcaatgtcgaggggctgatc
ggtctcaccggcgggctctcggggccgctcgacaccagcctgcgtgccggccgcgtcgat
caggccgcgcgccgcctggagatcctgaaaggggcattcggcgaggagcacctctacgtc
gagatccagcgccacggcctcgacgacgagcgcgcggtcgagcgcgaattgctgcggctc
gcggacacgaacggcctcggcatcgtcgccaccaacgagccgttcttcgccaagcccggc
gattacgacgcgcacgacgcgctgctcgccatcgccgagggccgcctcgtctccgacgag
cgccgccgccggctcaccccgcgccacgccttcaccacgcgcgccgcgatgatggagctg
ttccgcgatctgccggacgcgctctcggcctccgtcgagatcgccatgcgctgctcttac
cgggcgcgcacccgcaaacccatcctgccgaacttcgccagcgtcgcggcgggcgaggcg
ccgcccatggccgacgcactggccgaggccgcccagacgccggttcaggcggtggccgcc
gacgagccgaccgagctgtgccgacaggccgaggccgggctgaagctgcgcttgaagcag
cacggcaccgcgccgggcttcacggaggaggattaccgcgcgcggctgaagttcgagctc
gacgtcatcgtcaagatgaagttcccgggctacttcctgatcgtctcggacttcatcaag
tgggccaaggaccacgatatccccgtggggccgggccgcggctcgggcgcgggctcgctg
gtggcgtggtcgctcctcatcaccgacctcgacccgctgcgcttcggcctgctgttcgag
cgcttcctcaaccccgaacgcgtctcgatgccggacttcgacatcgacttctgcgtcgag
ggccgcgagcgggtgatccgctacgtgcagcagcgctacggcgagcggcaggtcgggcag
atcatcaccttcggtacgttgctcgcccgcggcgtgctgcgcgacgtcggccgcgtgctg
gaaatgccctacgggcaggtcgacaagctgaccaagctcgtaccgcagaacccggccaac
cccgtgacgctggcccaggcgatcgagggcgagcccaagctccagcaggcgatcgaggag
gagccgatcgtcgcccgcctcatcgagatctcgaagaagctggagggcctgcaccgccac
gcctcgacccacgccgccggcgttgtgatcggcgaccggccgcttgaagagctggtgccg
ctctaccgagacccgaagacgggcatgcgggtgacccagttcaacatgaagtgggtcgag
caagccggcctcgtgaagttcgacttcctcggcctcaagactctgacgatgctgcggtgc
tgcacggatctgctcaagcagcgcggcatcgaggtcgatctcgcccagatccccctcgac
gacaagaagacctacgagccgatgggccgcggcgagaccgtcgcggtgttccaggtggaa
tccgccggcatgcgcaaggcgctctgcgagatgcaggccgaccgcctggaggatatcatc
gcgctggtggcgctctaccggccgggcccgatggccaacatcccggtctattgcgagcgt
aagctcgggcgcgacgccggcaacgaggcgagctggtactcgcacccgatgctggagccg
atcctgaaggagaccttcgggatcatcgtctaccaagagcaggtgatggaggtcgccaag
gttctcgccggctacacgctgggcgaggccgacatgctccgccgcgccatgggtaagaag
atcaaggcggagatggacgcccagcgcgaccgcttcgtgaagggctgcaccgagaacggc
ctgaccaaggccaaggccgacgagatcttcgacctgctcgccaagttcgccgattacggc
ttcaacaagtcccacgcggccgcctacgcgctggtgacctaccagaccgcctatctgaag
gcgaaccatccggtcgagttcctggccgcggccatgacgctcgacatcgacaacaccgac
aagctcgccgaattccgccaggacgcgcagcgcctgaagatcacggtcgagcccccgtcg
gtgaacacctcgggcgtggtgttcgacgtgcgggaggggcgcatcctctacgcgctcgcc
gcgatcaagggcgtcggccgctcggcggtggagtcgatcgtcgccgcgcgcggcgacacg
ccgttcaaggacctcgcctgcttcgcccggcgcctcaacccgcgccacgtcaacaagcgc
acgctggaaaacctgattgcggccggcgcgctggactgcatcgagcccgatcgcgcgcgc
gcctgggccgcggtcgagccgatgatgaagatggcgcagggtgcggccgaggccgagacc
tcgggcatcaccgacatgttcggcggcgtcgcctcggtggatgtggctttacgcatcccg
ccgcacgagttctggacccataccgacaagctgaagcgcgaatgcgacgccatcggcttc
ttcctctcgggccatccgctcgacgagtacgggccgatcctcgaaaagctgcgagtccag
tcctgggccgatttctgccgggcggtgcgggcgggcacggccagcgtcgggcggatcgcg
gcctcggtgctcgaccgctcggagcgccgcaccaagagcggcaacaagctcggcatcgtc
atcctctcggaccagaccgggcatttcgaggcgatcatcttctccgaggggctgaaccag
taccgcgacatcctcgagcccggccgcccgctggtgctgacgatccaggccaacctggaa
ggtgaggacgtgcgcgcccgcatcaccaccgccgaaccgctcgatcaggccgccgcccgc
caccagaagggcatgcgcatcttcctgcgcgacgaccgcgccttgagttcggtgcagcag
cgcctgaccctgcgcggcgagggcgaggtttcgctgatcctgatcctcgatggcggcgag
cgcgaggtcgaggtgcggctgaaggatcgctaccaggcgaccccgcaggttgcgggtgcg
ctgcgcgccgtgccgggggtggttcaggtggaggtgaactga
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