Methylorubrum extorquens DM4: METDI1551
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Entry
METDI1551 CDS
T00947
Name
(GenBank) putative hydrolase, metallo-beta-lactamase superfamily
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mdi
Methylorubrum extorquens DM4
Pathway
mdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
METDI1551
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdi03019
]
METDI1551
Messenger RNA biogenesis [BR:
mdi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
METDI1551
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
CAX23148
UniProt:
C7CGP8
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All DBs
Position
complement(1414128..1415801)
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AA seq
557 aa
AA seq
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MTTRQDELVFVPLGGVGEIGMNAGLYGIGPEKQRKWIMVDCGMGFAGEEGLPGIDLMFPD
LTFIEERKKDLLAIFITHAHEDHIGAISELWPRIKAPVYATRFAKNLLETRRLSEPGAPK
VDLREIKPGRRVTVGPFEIEFVPVAHSIPESNAVAIRTEHGLVLHTGDWKLDDTPVAGDS
TSPEAFTALGDEGILALICDSTNVLREGRSPSESEVSATLHKLIENAPHRVAVTTFASNV
ARIRAVAEAAQACGRQVIAVGRAMDRVIDVARECGYLDGLPDFLSAESYSHIPRDKVVCL
LTGSQGEPRAAMSRVSRHDHPAISLTAGDRVIFSSRAIPGNERDVGSIINDLIEDGIEVI
TDRTELVHVSGHPRREEMVTMYSWTRPKAVVPVHGEALHLDEHARFARSQGVESVVKARN
GAVVRLAPGKPEVVEHVRAGRLYKDGNVLIDSKDRAIPERRKLSQTGIVSVAIAIDERGE
VIGDPAVDIMGLPNRGRTGEPLLDTVVDTVNRTLNGLPRGKMKDSEAVENAVDRAVRSAV
NEAWGKKPACHVQVVEV
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacgacacggcaggacgaactcgtcttcgtgccgctcggcggcgtgggcgagatcggc
atgaatgcgggcctctacgggatcggacccgagaagcagcgcaaatggatcatggtcgat
tgcggaatgggctttgccggcgaagagggattgcccggcatcgacctgatgttccccgat
ctcaccttcatcgaggagcgcaagaaggaccttctcgcaatcttcatcacccacgcgcac
gaggaccatatcggcgcgatctccgagctgtggccgcgcatcaaggcgccggtctacgcc
acgcggttcgccaagaacctgctcgagacccgccgtctctccgagcccggcgcgccgaag
gtggatctccgcgagatcaagccaggccgtcgggtgaccgtcggaccgttcgaaatcgag
ttcgtgccggtggcccactcgatcccggaatcgaacgcggtggcgatccgcaccgagcac
ggcctcgtgctccacaccggcgactggaagctcgacgacaccccggtggccggcgactcg
acgtcccccgaggcgttcacggctttgggcgacgagggcatcctcgcgctcatctgtgac
tccaccaacgtgctgcgcgagggccgctcgccgagtgagtccgaggtctccgcgaccctg
cacaagctgatcgagaacgcgccccaccgcgtggcggtgacgaccttcgcctccaacgtt
gcgcgtatccgggccgtggcggaagcggcgcaggcctgcggacgtcaggtgatcgccgtc
ggccgcgccatggatcgggtgatcgatgtcgcccgcgagtgcggctacctcgacgggctg
ccggacttcctctcggccgagtcctactcccacatcccgcgcgataaggtggtctgcctg
ctcaccggctcgcagggcgagccgcgggcggcgatgtcgcgggtctctcgccacgaccat
ccggcgatctcgctcacggccggcgaccgggtgatcttctcgtcgcgcgccatccccggc
aacgagcgcgatgtcggctccatcatcaacgacctgatcgaggacggcatcgaggtcatc
accgaccgcaccgaactcgtccacgtctccggccatccccgccgcgaggagatggtgacg
atgtattcctggacgcggccgaaggcggtcgttccggtgcacggcgaggcactgcatctc
gatgagcatgcgcgctttgcccgttcgcagggcgtcgagtcggtggtgaaggcccgcaac
ggcgcggtggttcgcctcgcgccgggcaagccggaggtggtcgagcacgtccgcgccggg
cggctctacaaggacggcaacgtcctcatcgactccaaggaccgggcgatccccgagcgg
cgcaagctctcgcagaccggcatcgtctcggtggccatcgccatcgatgagcgcggtgag
gtgatcggcgatccggcggtcgacatcatgggcctgcccaatcgtggccggaccggcgag
ccgctgctcgacaccgtggtcgatacggtcaaccgcaccctcaacggtctgccgcgcggc
aagatgaaggattcggaggcggtcgagaacgcggtcgatcgcgccgtgcgctccgccgtc
aacgaggcctggggcaagaagcccgcctgccacgtgcaggtggtggaggtgtga
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