Methylorubrum extorquens DM4: METDI2228
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Entry
METDI2228 CDS
T00947
Symbol
rho
Name
(GenBank) transcription termination factor Rho; polarity suppressor
KO
K03628
transcription termination factor Rho
Organism
mdi
Methylorubrum extorquens DM4
Pathway
mdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
METDI2228 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mdi03021
]
METDI2228 (rho)
03019 Messenger RNA biogenesis [BR:
mdi03019
]
METDI2228 (rho)
Transcription machinery [BR:
mdi03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
METDI2228 (rho)
Messenger RNA biogenesis [BR:
mdi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
METDI2228 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_22
OB_RNB
NACHT
AAA
S1CSD-TOTE-2
AAA_25
DnaB_C
AAA_14
Motif
Other DBs
NCBI-ProteinID:
CAX23829
UniProt:
C7CBR4
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All DBs
Position
2113331..2114674
Genome browser
AA seq
447 aa
AA seq
DB search
MTSQNDALTPVEAPAEAVVAPADLVARREVKLQDLKSKTPTELTAFAEEVGVENASTMRK
QELMFAILKQLAANETEIIGAGTVEVLQDGFGFLRSHDSNYLPGPDDIYISPTQIRRFGL
RTGDTVEGPIRGPKDGERYFALLKVNTINFENPEKIKHKVHFDNLTPLFPTQRFKLELDN
PPKKDFSPRIIDIVSPIGKGQRALIVAPPRTGKTVLMQNIAQSITINHPECYLIVLLIDE
RPEEVTDMIRSVKGEVIASTFDEPATRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLG
RAYNTVVPSSGKVLTGGVDANALQRPKRFFGAARNIEEGGSLSIIATALIDTGSRMDEVI
FEEFKGTGNSEIILDRKVSDKRIFPAIDITRSGTRKEELLVPPDALKKTYVLRRILNPMG
VTDAIEFLMDKLRQTKSNGDFFDSMNT
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcacagaacgacgctctcacccccgttgaagctccggccgaagccgtcgtcgcg
ccggccgatctcgtcgcccggcgtgaggtgaagcttcaggacctcaagtccaaaacgccg
accgagctcacggccttcgcggaggaggtcggtgtcgagaacgcctcgaccatgcgcaag
caagagctgatgttcgcgatcctcaagcagctcgcggccaacgagaccgagatcatcggc
gccggcacggtcgaggtgctccaagacgggttcggcttcctgcgctcgcacgattcgaac
tatctgccgggtccggacgacatctacatctcgccgacccagatccgccgcttcggccta
cgcaccggcgacaccgtcgagggcccgatccgcggccccaaggacggcgagcgctatttc
gcgctgctcaaggtcaacacgatcaacttcgagaacccggagaagatcaagcacaaggtc
cacttcgacaacctgacgccgctgttcccgacgcagcgcttcaagctcgaactcgacaac
ccgccgaaaaaagatttcagccctcggatcatcgacatcgtctcgccaatcggcaagggc
cagcgcgcgctgatcgttgcgccgccgcgcaccggcaagaccgtgctgatgcagaacatc
gcgcagtcgatcacgatcaaccatcccgaatgctacctcatcgtgctgctcatcgacgag
cgcccggaagaggtgaccgacatgatccgctcggtgaagggcgaggtcatcgcctcgacc
ttcgacgagccggccacccgccacgtgcaggtcgccgagatggtgatcgagaaggccaag
cgcttggtcgagcacggccgcgacgtcgtgatcctcctcgactccatcacccgcctcggc
cgcgcctacaacacggtcgtgccgtcctccggcaaggtgctgaccggcggtgtcgatgcc
aatgccctgcagcggcccaagcgcttcttcggtgcggcccgcaacatcgaggagggcggc
tcgctctccatcatcgcgaccgcgctgatcgataccggctcgcgcatggacgaggtgatc
ttcgaggagttcaagggcaccggcaactccgagatcattctcgaccgcaaggtctccgac
aagcgcatcttcccggccatcgacatcacccgctccggcacccgtaaggaagagctgctg
gtgccgccggacgcgctcaagaagacctacgtcctgcgccgcatcctcaacccgatgggc
gtcaccgacgcgatcgagttcctcatggacaagctgcgccagacgaagagcaacggcgac
ttcttcgactcgatgaacacctaa
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