Methylorubrum extorquens DM4: METDI2252
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Entry
METDI2252 CDS
T00947
Name
(GenBank) putative DNA polymerase III, delta subunit, holA
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
mdi
Methylorubrum extorquens DM4
Pathway
mdi03030
DNA replication
mdi03430
Mismatch repair
mdi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mdi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
METDI2252
03430 Mismatch repair
METDI2252
03440 Homologous recombination
METDI2252
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mdi03032
]
METDI2252
03400 DNA repair and recombination proteins [BR:
mdi03400
]
METDI2252
Enzymes [BR:
mdi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
METDI2252
DNA replication proteins [BR:
mdi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
METDI2252
DNA repair and recombination proteins [BR:
mdi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
METDI2252
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delt_C
DNA_pol3_delta
DNA_pol3_delta_C
Motif
Other DBs
NCBI-ProteinID:
CAX23853
UniProt:
C7CCM9
LinkDB
All DBs
Position
complement(2139879..2140910)
Genome browser
AA seq
343 aa
AA seq
DB search
MTAVKAGDVEGLVRRGPDPRIAVVLVYGPDVGLVADRAMRLVRGMVADPDDPFALIRIDG
DTLASDPGRLVDEAGTVGLFGGSRTIWVRSGSRNYAPAVDAVLKAPTEGARIVVEAGDLA
RSAPLRTLCEGSPKALALPCYPDDERTLADLIERTLQEDGLRIDRDARDLLTGSLGSDRR
ASLSEIGKLALYARGQGSVGVDDVEAIVSDVGASVLNALIDAAFAGRASEAEREYRRFRH
EGMDPSAMLGAGLRHALTLLSLRLDNPRGSASQIVANWRGLHFRRKALAETQLARWSAPG
LQQAVAWLQDAVLACRRSEPDLAHAQAQGVFLRIAIEAARRRA
NT seq
1032 nt
NT seq
+upstream
nt +downstream
nt
atgacggcggtcaaagccggcgatgtcgaggggctggtccggcgcggccccgatccgcgc
attgcggtcgttctggtctacgggccggatgtcggcctcgtcgctgaccgggcgatgcgg
ctggtccgggggatggtcgccgaccccgacgacccctttgcgctcatcaggatcgacggc
gacaccctcgcctccgacccgggccgcttggtcgacgaggccggcaccgtcggcctgttc
ggcggcagccgcacgatctgggtccgctccggcagccgcaattacgcgccggccgtcgat
gcggtgctgaaggcgccgaccgaaggcgcccgcatcgttgtggaggccggcgacctcgcc
cgctccgcccccctgcgcacgctctgcgagggatcgcccaaggcgctcgccctgccctgc
taccccgacgacgagcgaacgctcgccgatctgatcgagcgcacattgcaggaggacggg
ctgcgtatcgaccgcgacgcccgcgacctgctgacgggcagcctcggcagcgaccgccgc
gccagcctgtccgagatcggtaagctcgccctctacgcccgcggccagggcagcgtcggc
gtggacgacgtcgaggcgatcgtcagcgatgtcggggccagcgtcctcaacgcgctgatc
gacgcggccttcgccggccgtgccagcgaggccgagcgcgagtatcgccgcttccgccac
gaggggatggacccctcggcgatgctcggcgccgggttgcgccacgcgctcacgctgctc
tccctacgcctcgataatccgcgcggcagcgcgagccagatcgtcgccaattggcgcggc
ctgcatttccgccgcaaggcgctggccgaaacccagctcgcccgctggtcggcaccaggg
ctgcaacaggccgtggcatggctccaggacgcggtgctcgcctgccgccgctcggagccg
gaccttgcccacgcccaagctcagggcgtgttcctgcggatcgccatcgaggccgcgcgg
cggcgcgcctga
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