Methylorubrum extorquens DM4: METDI2949
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Entry
METDI2949 CDS
T00947
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase alpha chain (RNAP alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit)
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
mdi
Methylorubrum extorquens DM4
Pathway
mdi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mdi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
METDI2949 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mdi03021
]
METDI2949 (rpoA)
03400 DNA repair and recombination proteins [BR:
mdi03400
]
METDI2949 (rpoA)
Enzymes [BR:
mdi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
METDI2949 (rpoA)
Transcription machinery [BR:
mdi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
METDI2949 (rpoA)
DNA repair and recombination proteins [BR:
mdi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
METDI2949 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
CAX24604
UniProt:
C7CK59
LinkDB
All DBs
Position
complement(2876608..2877627)
Genome browser
AA seq
339 aa
AA seq
DB search
MVIQKNWQELIKPNKLQVTAGDDPKRVATVVAEPLERGFGTTLGNSLRRVLLSSLQGAAV
TSVQIDGVLHEFSSIPGVREDVTDIVLNIKTIAIRSQTDQPKRMTLRKTGPGLVTAGDIG
AVGDIQILNPDLVICTLDDGAEIRMEFTVATGKGYVPAERNRPEDAPIGLIPVDALYSPV
TKVSYRVETTREGQDLDKDKLTMTLETNGAVSPEDALAYAARIIQDQLQVFVNFEEPRKE
EAAPLAPQLPFNPALLKKVDELELSVRSANCLKNDNIVYIGDLIQKSEGEMLRTPNFGRK
SLNEIKEVLAGMGLHLGMDVPGWPPENIEDLAKRFEEHY
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
gtggtcattcagaagaactggcaagagctcatcaagccgaacaagctgcaggtgacggcc
ggcgacgatcccaagcgggtcgccaccgtcgtggccgagccgctcgagcgcggcttcggc
acgacgctcggcaacagcctgcgccgcgtgctgctctcctcgcttcagggcgctgccgtc
acctccgtccagatcgacggcgtgctgcatgagttctcgtcgatccccggcgtgcgtgag
gacgtgaccgacatcgtcctcaacatcaagaccatcgcgatccgctcgcagacggatcag
cccaagcgcatgaccctgcgcaagacgggcccgggcctcgtcaccgcgggcgacatcggc
gccgtcggcgacatccagatcctgaaccccgacctcgtgatctgcaccctggacgacggg
gccgagatccgcatggagttcaccgtcgctaccggcaagggctacgtcccggccgagcgc
aaccgccccgaggacgcgccgatcggcctgatcccggtcgatgcgctctactccccggtg
accaaggtcagctaccgcgtcgagaccacccgcgagggccaggatctcgacaaggacaag
ctgacgatgacgctcgagaccaacggcgccgtgtcgccggaggatgcgctggcatacgcc
gcccgcatcatccaggaccagctccaggtcttcgtgaacttcgaggagccccgcaaggaa
gaggccgcgccgctcgcgccgcagctccccttcaacccggcgctgctcaagaaggtggac
gagctcgaactgtcggtccgttcggcgaactgcctgaagaacgacaacatcgtctatatc
ggcgacctcatccagaagtcggagggcgagatgctgcgcaccccgaacttcggccgcaag
tcgctcaacgagatcaaggaagtgctcgccggcatgggcctgcacctcggcatggacgtt
cccggctggccgccggagaacatcgaggatctcgccaagcgcttcgaagagcactactga
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