Methylorubrum extorquens DM4: METDI3225
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Entry
METDI3225 CDS
T00947
Name
(GenBank) 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
mdi
Methylorubrum extorquens DM4
Brite
KEGG Orthology (KO) [BR:
mdi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mdi03016
]
METDI3225
Enzymes [BR:
mdi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
METDI3225
Transfer RNA biogenesis [BR:
mdi03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
METDI3225
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
CAX24877
UniProt:
C7CMA1
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All DBs
Position
3150029..3150658
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AA seq
209 aa
AA seq
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MAAAPSRIRLHHGDLPPDFAPGAAIAIDTETLGLNPHRDRLCVVQVSRGDGSADVVQIRP
GDPAPERLKAVLADAGVVKIFHFARFDLAVLFNAFGVMPAPVYCTKIASKLARTYTDRHG
LKDVVRELVGVDLSKQQQSSDWGAGTLSQAQIDYAASDVLHLHAARERLDAMLAREGRTE
MAQACFDFLPTRSKLDLAGWPEIDIFAHA
NT seq
630 nt
NT seq
+upstream
nt +downstream
nt
atggctgccgccccctcccggatccgcctccaccacggcgacctgccgcccgatttcgcg
ccgggcgcggcgatcgcgatcgataccgagacgctggggctcaacccgcatcgcgaccgg
ctctgcgtcgtgcaggtgtcccgcggcgacggcagcgccgatgtggtgcagattcggccc
ggcgacccggcgccggagcggctcaaggcggtcctggccgatgccggggtggtcaagatc
ttccacttcgcccggttcgatctcgcggtgctgttcaacgcgttcggcgtcatgcccgct
ccggtctactgcacgaagatcgcctcgaagctcgcccgcacctacaccgaccgtcacggc
cttaaggacgtggtgcgcgagcttgtgggcgtcgatctctccaagcagcagcaatcctcc
gattggggcgcggggaccctgagccaggcgcagatcgactacgcggcatcggacgtgctc
cacctgcatgccgcccgcgagcgtctcgacgccatgctggcccgcgagggccgcaccgag
atggcgcaggcctgtttcgacttccttccgacccgatccaagctcgatctcgccggctgg
ccggagatcgacatcttcgcccacgcttga
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