Methylorubrum extorquens DM4: METDI3304
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Entry
METDI3304 CDS
T00947
Symbol
rhlE
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mdi
Methylorubrum extorquens DM4
Pathway
mdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
METDI3304 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdi03019
]
METDI3304 (rhlE)
Enzymes [BR:
mdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
METDI3304 (rhlE)
Messenger RNA biogenesis [BR:
mdi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
METDI3304 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_19
Motif
Other DBs
NCBI-ProteinID:
CAX24953
UniProt:
C7CMH7
LinkDB
All DBs
Position
3239358..3240890
Genome browser
AA seq
510 aa
AA seq
DB search
MTQFTDFGLAQPVLRALEEAGYVTPTPIQAQAVPPAMEGRDLCGIAQTGTGKTAAFALPI
LHRLSLDSRRAPRRGCRVLVLSPTRELASQIADSFSDYGRHLPYTNTVVFGGVNITRQER
AIAPGVDILVATPGRLIDLVDRRALTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPAK
RQSLFFSATMPKNIAGLADQYLSNPVQVAVTPVATTAERVDQQVIFCHTGAKQALLNHVL
RDPKIERVLVFTRTKHGADRVVRGLDKANVVSAAIHGNKSQPQRERALAAFRDGSCRVLV
ATDIAARGIDVDGVTHVVNYDLPNVPESYVHRIGRTARAGAEGQAISFCNDEERAYLRDI
ERTTRQKIPVGGFPEGFVPPSRQEAQDNAAEEARRPPRQPQGRPGQRQGRPGGGRGQGGE
GRGEPRAHEARGGRPGGQPGHRQDQRAAGAPRPDGQRQDQRRPERAGEARPQGARPQGAR
PSDGRRDGRPARSGGEGGRAIGWLDRAPRT
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
ttgacccaatttaccgatttcggcctcgctcagcccgtgctccgcgcgctggaagaggcc
ggctatgtcacgccgacgccgatccaggcgcaggccgtcccgcccgcgatggaaggccgc
gacctctgcggcatcgctcagaccggcaccggcaagaccgctgccttcgccctgccgatc
ctgcatcgcctgtcgctcgacagccgccgtgcgccgcgccgcggttgccgcgtgctcgtg
ctgtccccgacccgcgagctcgccagccagatcgccgacagcttctcggattatggccgg
cacctgccctacaccaacaccgtcgtcttcggcggtgtgaacatcacccgccaggagcgg
gcgatcgcgccgggcgtcgacatcctcgtcgccacgccgggccggcttatcgacctcgtc
gatcgccgcgcgctgacgctggagggcgtcgagatcctcgtcctcgacgaggccgaccag
atgctcgacctcggcttcatccacgcgctgaagcgcattgtgaagatgctgccggccaag
cgccaaagcctgttcttctcggccaccatgccgaagaacatcgccgggctcgccgaccag
tatctcagcaacccggtgcaggtggcggtcacgcccgtggcgaccaccgccgagcgcgtc
gatcagcaggtcatcttctgccacaccggcgccaagcaggccctgctcaaccacgtcctg
cgtgatccgaagatcgagcgcgtgctcgtcttcacccgcaccaagcacggcgcggaccgg
gtcgtgcgcggcctcgacaaggccaacgtcgtcagcgcggcgatccatggcaacaagagc
cagccgcagcgcgagcgggcgctcgccgccttccgcgacggttcctgccgcgtgctggtg
gcgaccgacatcgccgcccgcggtatcgatgtcgacggcgtgacccacgtcgtgaactac
gatctgccgaacgtgccggaatcctacgtccaccgcatcggccgtacggcgcgtgcgggt
gcggaaggtcaggcgatctcgttctgcaacgacgaggagcgcgcttacctgcgcgacatc
gagcgcaccacgcgccagaagattcccgtcggcgggttccccgagggcttcgtgccgccg
tcgcgccaggaagcgcaggacaacgccgccgaggaggcgcgccgtccgccgcgtcagccg
cagggccgtccgggccagcgccagggtcgtccgggcggcggtcgcggccagggcggcgag
ggacgcggcgagccgcgcgcccacgaagcccgcggcgggcgtcccggtggacagccgggt
caccgtcaggaccagcgcgccgccggcgcaccgcgtcccgacggtcagcgtcaggaccag
cgccgtcccgagcgggccggtgaggctcgtccgcagggtgcgcgtccgcaaggagcccgt
ccgagcgacggccgtcgcgacggtcggcccgcgcgctccggtggcgagggcggacgggcg
atcggctggctcgaccgcgcaccgcgcacctga
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