Methylorubrum extorquens DM4: METDI3456
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Entry
METDI3456 CDS
T00947
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B (tRNA pseudouridine 55 synthase) (Psi55 synthase) (tRNA-uridine isomerase) (tRNA pseudouridylate synthase)
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
mdi
Methylorubrum extorquens DM4
Brite
KEGG Orthology (KO) [BR:
mdi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mdi03016
]
METDI3456 (truB)
Enzymes [BR:
mdi01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
METDI3456 (truB)
Transfer RNA biogenesis [BR:
mdi03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
METDI3456 (truB)
Prokaryotic type
METDI3456 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
Motif
Other DBs
NCBI-ProteinID:
CAX25100
UniProt:
C7C8F9
LinkDB
All DBs
Position
complement(3378471..3379496)
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AA seq
341 aa
AA seq
DB search
MQDDISPERAGEAPQEPRGDLRRDGPPRGGRRPQRGRPRHDRPKKNDVSGWVVLDKGVGI
TSTQAVAVVKRLFNAKKAGHAGTLDPLASGILPIALGEATKTVPFVMDGRKAYRFEVTWG
VETDTDDAEGRPVETSDVRPTREALEGALPAFVGEIEQVPPRYSAIKIQGERAYDLARDG
EVVELVARSVRIDHLSVIEHHGDRTVIAAECGKGTYVRALARDLGRVLGCYGHVSALRRT
RVGPFEEAAACSVATLEESTEMHLHAVETALDEVPSVAVSRDMGLRLMRGQPVILRGQDA
PIGGKAYATCGGVLVAVGDVERGELVPHRVFHLGGTAAPRN
NT seq
1026 nt
NT seq
+upstream
nt +downstream
nt
atgcaagacgacatttctcccgaacgcgccggtgaagcgccgcaggagccgcggggcgac
ctgcgccgggacggaccgccgcggggcggacgccgccctcagcgcggccgtccgcgccat
gaccggccgaagaagaacgacgtgagcggctgggtggtgctcgacaagggcgtcggcatc
acctcgacccaggccgtggcggtggtgaagcgcctgttcaacgccaagaaggcgggtcat
gccggcacgctcgatccgctggcttcgggcatcctgccgatcgcgcttggcgaggcaaca
aagacggtgccgttcgtcatggacgggcgcaaggcctaccgcttcgaggtgacctggggt
gtcgagaccgacaccgacgacgctgagggtcgcccggtcgagacctccgatgtccgtccg
acccgcgaggcgctcgagggggctctgcccgccttcgtcggcgagatcgaacaggtgccg
ccgcgctactccgccatcaagattcagggcgagcgcgcctacgacctcgcccgtgacggc
gaggtggtggaactggtggcccgctccgtgcgcatcgaccacctctcggtgatcgagcac
cacggcgaccgcaccgtgatcgccgcggaatgcggcaagggcacctacgttcgtgcactg
gcccgcgatctcggccgggtgctcggctgctacggtcacgtctcggccctgcggcgcacc
cgcgtcggccccttcgaggaggcggccgcctgcagcgtcgccaccctcgaagaaagcacc
gagatgcatctccacgcggtcgaaacggccttggacgaggtgccctcggtggcggtcagc
cgcgacatggggcttcgcctgatgcgcggtcagccggtgattctgcgcgggcaggacgcg
ccgatcggcggcaaggcctacgcgacctgcggcggcgtgctcgtcgccgtcggcgatgtc
gagcgcggcgaactggtgccgcatcgcgtgtttcacctcggcggaacggcggcaccgaga
aactga
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