Methylorubrum extorquens DM4: METDI4100
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Entry
METDI4100 CDS
T00947
Symbol
TopA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
mdi
Methylorubrum extorquens DM4
Brite
KEGG Orthology (KO) [BR:
mdi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mdi03032
]
METDI4100 (TopA)
03400 DNA repair and recombination proteins [BR:
mdi03400
]
METDI4100 (TopA)
Enzymes [BR:
mdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
METDI4100 (TopA)
DNA replication proteins [BR:
mdi03032
]
Prokaryotic type
DNA Topoisomerases
METDI4100 (TopA)
DNA repair and recombination proteins [BR:
mdi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
METDI4100 (TopA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
CAX25733
UniProt:
C7CD03
LinkDB
All DBs
Position
complement(4034008..4036740)
Genome browser
AA seq
910 aa
AA seq
DB search
MKVVVVESPAKAKTINKYLGRDYEVLASFGHIRDLPAKDGSVDPEADFAMIWEVEDRGAK
RVSEIARAVKGAEKLILATDPDREGEAISWHVIEALTARKALKGIPVERVTFNAITKASV
DAAMKKPRQIDQALVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVVER
EMEIERFKPREYWSIIATLVTEAGGVFEARLVGADGKRIQRLDVGNAEEAAAFKRDLELA
TFQVASIEAKPAKRHPQPPFTTSTLQQEASRKLGMAPAQTMRVAQRLYEGVDVGGETVGI
ITYMRTDGVDMAPEAIQDARQVIGREFGDAYVPGAPRKYTVKAKNAQEAHEAVRPTDMGR
LPKHVARHLEPEQAKLYDLIWTRTIASQMESAELERTTVEVSANVGPRRIDLRATGQVVK
FDGFLALYQEGKDDEEDEDAKRLPAMKAGDALKRERIASTQHFTEPPPRYSEASLVKRME
ELGIGRPSTYAAVLQTLRDREYVRIEKKRLQPEDKGRLVTGFLESFFKRYVEYDFTASLE
EQLDRVSNAEIDWRSVLRDFWRDFSAAIGGTKELRVAEVLEALNGLLGPHIFPEKADGGD
PRACPTCGAGQLSLKLGKFGAFIGCSNYPECKYTRQLSASGVEGEGDGSSAEGGQPGVRV
LGDDPATGLPVTLRDGRFGPFVQLGEASAEKGAEKPKRSSLPKGMTSGSVTLEIALRLLS
LPREVAKHPETGEPILANLGRFGPYVQHGKTYANLGKDDDVLEIGANRAIDLIVAKEQGG
GRGRPSSDPGRTLGQHPDGAALVVKAGKYGPYVSDGSVNATLPKTMAAESLTLEQAIDLI
NAKRASGGGKKPVRKAASRARAPAKKAEAGEAKKPAVRKTAAKPAAKATATKAAAKPAAA
KKATAKTKAG
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtcgtcgtcgtcgagtcgccggccaaggccaagacgatcaacaaatacctgggg
cgcgattacgaggttctggcctcgttcggccatatccgcgatctgccggccaaggacggc
tcggtcgatccggaggccgacttcgccatgatctgggaggtggaggatcgcggcgccaag
cgcgtgtccgagatcgcccgcgccgtgaagggagccgagaagctcatcctcgcgaccgac
ccggatcgcgaaggcgaggcgatctcctggcacgtcatcgaggcgctcaccgcccgcaag
gcgctcaagggcatccccgtcgagcgcgtgaccttcaacgccatcaccaaggcgtcggtc
gatgcggcgatgaagaagccgcgccagatcgaccaagccctggtcgatgcctatctcgcg
cgccgcgcgctcgattacctcgtcggcttcaacctctcgccggtgctgtggcgcaagctg
cccggcgcccgctcggccggccgagtgcagtcggtggcgctccgcctcgtggtcgagcgc
gagatggagatcgagcgcttcaagccgcgtgagtattggtcgatcatcgccacgctggtg
acggaagccggcggcgtgttcgaggcccggctcgtcggcgccgacggcaagcgcatccag
cgcctcgacgtcggcaatgccgaggaggcggcggcgttcaagcgcgatctcgaactcgcg
accttccaggtggccagcatcgaggccaagcccgccaagcgccatccgcagccgcccttc
accacctccacgctgcagcaggaggcgtcccgcaagctcgggatggccccggcgcagacc
atgcgggtcgcccagcggctctacgagggcgtggatgtcggcggcgagaccgtcggcatc
atcacctacatgcgaaccgacggcgtcgacatggcgccggaggcgatccaggacgcgcgc
caggtgatcggccgcgaattcggcgacgcttacgtccccggcgcgccgcgcaaatacacc
gtcaaggccaagaacgcgcaggaggcccacgaggcggtgcgcccgaccgatatgggccgg
ttgccgaagcacgtcgcccgccacctcgagccggagcaggccaagctctacgacctgatc
tggacccgcaccatcgcgagccagatggaatcggccgagctggagcgcaccaccgtcgag
gtcagcgcgaatgtcggcccgcgccggatcgacctgcgcgccaccggtcaggtcgtgaag
ttcgacggcttcctcgcgctctatcaggagggcaaggacgacgaggaggacgaggatgcc
aagcgcctgccggcgatgaaggcgggcgacgcgctcaagcgcgagcgcatcgcttcgacc
cagcacttcaccgagccgccgccgcgctactccgaggccagcctggtcaagcggatggaa
gaactcggcatcggccggccctcgacctatgccgcggtactgcagaccctgcgcgaccgc
gaatatgtccgcatcgagaagaagcgcctccagccggaggacaaggggcggctcgtcacc
ggcttcctcgaaagcttcttcaagcgctacgtcgagtacgacttcaccgcgagcctggaa
gagcagctcgaccgggtctcgaatgccgagatcgactggcgctccgtgctgcgcgacttc
tggcgcgatttttccgccgcgatcggcggtaccaaggaattgcgcgtcgcggaggttctc
gaggcgctcaacggcctgctggggccccacatcttccccgagaaggcggatggcggcgat
ccgcgcgcctgcccgacctgcggagcaggccagctctcgctcaagctcggtaagttcggc
gccttcatcggctgctcgaattacccggaatgcaagtatacccgccagctctcggcctcg
ggcgtcgagggtgagggtgacggctcctcggccgagggcggccagcccggcgtgcgcgtg
ctcggcgacgatccggccaccggcctgcccgtgaccctgcgcgacggccgcttcgggccg
ttcgtgcagctcggcgaggcgagtgcggagaagggcgcggagaagcccaagcgctcctcg
ttgcccaagggcatgacgtcgggcagcgtgacgttggagatcgcgctacgcctgctgtcg
ctgccccgcgaggtggccaagcatccggagaccggcgagccgatcctagccaatctcggc
cgcttcggcccctacgtgcagcacgggaagacctacgccaatctcggcaaggacgacgac
gtgctggagatcggtgccaaccgcgccatcgacctcatcgtcgccaaggagcagggtggc
ggacgcggtcgcccctcctctgatcccggccgcacgctcggccagcatccggacggcgcc
gccctcgtggtcaaggccggcaagtacggcccctatgtcagcgatggctcggtcaacgcg
acgctgccgaagacgatggccgccgagagcctgacgctggagcaggcgatcgacctcatc
aacgccaagcgtgcctcgggcggcggcaagaagccggtccgcaaggcggcttcccgcgcc
cgcgcgccggcgaagaaggcggaagccggcgaggcgaagaagccggccgtgcgcaagacc
gcggcaaagccggcggccaaggcgacggcgacgaaggccgcggccaagccggcggctgcc
aagaaggcgacggcgaagacgaaggcgggctga
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