Methylorubrum extorquens DM4: METDI4129
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Entry
METDI4129 CDS
T00947
Symbol
groL
Name
(GenBank) 60 kDa chaperonin (protein Cpn60, groEL protein)
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
mdi
Methylorubrum extorquens DM4
Pathway
mdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
METDI4129 (groL)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdi03019
]
METDI4129 (groL)
03110 Chaperones and folding catalysts [BR:
mdi03110
]
METDI4129 (groL)
03029 Mitochondrial biogenesis [BR:
mdi03029
]
METDI4129 (groL)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mdi04147
]
METDI4129 (groL)
Enzymes [BR:
mdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
METDI4129 (groL)
Messenger RNA biogenesis [BR:
mdi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
METDI4129 (groL)
Chaperones and folding catalysts [BR:
mdi03110
]
Heat shock proteins
HSP60 / Chaperonin
METDI4129 (groL)
Mitochondrial biogenesis [BR:
mdi03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
METDI4129 (groL)
Exosome [BR:
mdi04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
METDI4129 (groL)
Exosomal proteins of other body fluids (saliva and urine)
METDI4129 (groL)
Exosomal proteins of breast cancer cells
METDI4129 (groL)
Exosomal proteins of colorectal cancer cells
METDI4129 (groL)
Exosomal proteins of bladder cancer cells
METDI4129 (groL)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-ProteinID:
CAX25762
UniProt:
C7CD32
LinkDB
All DBs
Position
complement(4061414..4063036)
Genome browser
AA seq
540 aa
AA seq
DB search
MAAKDVKFSGDARERLLRGVDILADAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEI
ELEDRFENLGAQLLREVASKTNDLAGDGTTTATVLAQAIVREGAKAVAANFNPLDLKRGI
DLATAAAVKDITARARKVTASDAIAQVGTISANGDAEIGRLIAEAVERVGKEGVITVEEA
KTAETELDVVEGLQFDRGYLSPYFVTNTEKLIAELDDPYILIHEKKLSSLQPLLPVLEAV
VQSSRPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAILEDIAILTNGQT
ISEDLGIKLENVSLPLLGQAKRVRIDKESTTIVDGAGDRAQIDARVAQIKAQIEETSSDY
DREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALNATRAAIEEGIVPGGGTALL
RAKAAVSALKSENADVKAGINIVLKALEAPIRQIAANAGVEGSIVVSKVIENGSETFGFD
AQTETYVDLIEAGIVDPAKVVRTALQDAASVAGLLVTTEALIAERPKEKAPPLPPGGPDF
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atggctgccaaggacgtgaaattctcgggtgatgcgcgcgagcgcctgttacgcggcgtc
gatattctggcggatgccgtgaaggtgacgctggggccgaagggccgcaacgtcgtgatc
gagaagagtttcggggcgccgcgcatcaccaaggacggcgtcaccgtcgccaaggaaatc
gagttggaggaccgcttcgagaatctcggcgcccaactcctgcgcgaagtcgcttcgaag
accaacgatctggccggcgatggcaccacgaccgcgaccgtgctcgcccaggcgatcgtc
cgcgagggcgcgaaggcggtggcggcgaacttcaacccgctcgacttgaagcgcggcatc
gacctcgccaccgccgccgccgtgaaggacatcaccgcccgcgcccgcaaggtgaccgcc
tccgacgccatcgctcaggtcggcacaatctccgccaacggcgacgccgagatcggccgc
ctcatcgccgaggccgtcgagcgggtcggcaaggaaggcgtcatcacggtggaggaggcc
aagaccgccgagaccgaactcgacgtcgtcgagggcctgcagttcgaccgcggctatctc
tcgccgtacttcgtgacgaatacggaaaagctgatcgccgaactcgacgatccctacatc
ctgatccacgagaagaagctctcctcgctgcagccgctgctgccggtgctggaggcggtc
gtccagtcgagccgtcccctgctcatcatcgccgaggatgtggagggcgaggcgctcgcc
accctcgtcgtgaacaagctgcgcggcggcctcaagatcgcggcggtgaaggctccgggc
ttcggcgaccgtcgcaaggcgattcttgaggacatcgcgatcctcaccaacggccagacc
atctccgaggatctcgggatcaagctcgagaacgtgtcgcttcccctgctgggtcaggcc
aagcgggtgcgcatcgacaaggagagcaccacgattgtcgacggagcgggggacagggcg
cagatcgacgcgcgtgtcgctcagatcaaggcgcagatcgaggagaccagttcggactac
gaccgcgagaagctccaggagcgcttggccaagctcgcgggcggcgtcgcggtgatccgc
gtcggcggcgcgaccgaggtcgaggtcaaggagaagaaagaccgggtggacgacgcgctc
aacgccacccgcgccgcgatcgaggaaggcatcgttccgggcggcggcaccgcgctcctg
cgggccaaggccgccgtatcagcgctcaagagcgagaatgccgatgtgaaggctggcatc
aacatcgtgctcaaggcgctcgaagcgccgatccggcagatcgcggccaatgccggggtc
gagggctcgatcgtcgtgtcgaaggtgatcgagaacggctcggagaccttcggattcgac
gcccagaccgagacctacgtcgacctgatcgaggccggcatcgtcgatccggccaaggtt
gtgcgcacggcactgcaggacgcggcctcggtcgccggcctgctggtgacgacggaggcg
ttgatcgccgagcggccgaaggagaaggcgccgccactgccacccggcgggcccgacttc
tga
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