Methylorubrum extorquens DM4: METDI4229
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Entry
METDI4229 CDS
T00947
Name
(GenBank) putative ornithine/diaminopimelate PLP-dependent decarboxylase
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
mdi
Methylorubrum extorquens DM4
Pathway
mdi00300
Lysine biosynthesis
mdi00470
D-Amino acid metabolism
mdi01100
Metabolic pathways
mdi01110
Biosynthesis of secondary metabolites
mdi01120
Microbial metabolism in diverse environments
mdi01230
Biosynthesis of amino acids
Module
mdi_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
mdi00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
METDI4229
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
METDI4229
Enzymes [BR:
mdi01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
METDI4229
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
Motif
Other DBs
NCBI-ProteinID:
CAX25860
UniProt:
C7CDU6
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All DBs
Position
complement(4167577..4168866)
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AA seq
429 aa
AA seq
DB search
MADAPDLAAALIAENFSRDASGVLRVGGLPLTELAKDFGTPLFVYDADTMRRTYRALCAA
LAGFAEVDFSVKANPNPAVIRVFSQEGAGAEIASGAEFDAAIRAGVPPEKILFAGPGKGA
ADLDRVIGGGIGEIHLENREEIVRVAAAAERHGVRVRVALRINPGATAQGGAMRMGGKPS
PFGFDEEDIEAAIDIVEAAPRLRLVGLHLFAGTQGLKADTLLGQWSYGLGLAARIANRIG
RPLETIDLGGGLGIPYFSGDTALDLGAIRAGLPDLIATLRADPKLASARVVLEPGRYLTG
PAGVYVARVLAVKESRGSRFVITDGGMHHHLAASGNLGQIVKRDFPLAAVTDLGGERAAT
AVVGPLCTPLDMLARAAPLPPLAEGDLVAVLQSGAYGLTASPTGFLSHPTPAEVLVDGGE
AREIRARGP
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgctcccgacctcgccgccgcgctgatcgccgagaacttctcgcgcgatgcg
agcggtgtgctgcgggtcggcggcttgccgctgaccgagctcgcaaaggatttcggcacg
ccgctcttcgtctacgacgccgatacgatgcgccgaacctaccgggcgctgtgcgcggca
ctcgccggcttcgcggaggtggatttttcggtcaaggcgaaccccaacccggcggtgatc
cgcgtcttctctcaggagggcgcgggggccgagatcgcctccggcgccgagttcgacgcc
gcgatcagggcgggtgttccaccggaaaagatcctgttcgccggcccgggcaagggtgcg
gccgacctcgaccgggtgatcggcggcggcatcggcgaaatccatctcgaaaaccgcgag
gagattgttcgcgtcgcggcggcggccgagcgtcacggcgtgcgcgtgcgggtggcgctg
cggatcaatcccggcgcgaccgcgcaaggcggggcgatgcggatgggcggcaagccttcg
ccgttcggcttcgacgaggaagacattgaggccgccatcgacatcgtggaggccgcgccg
cgcttgcgcctcgtcgggctccacctgttcgccggcacgcaagggctgaaggcggacact
ctcctcggccagtggagctacgggctcgggcttgcggcgcggattgcgaaccggatcggg
cggccgctggagacgatcgacctcggcggcggcctcggcatcccgtacttctccggcgac
accgccctcgatctcggcgcgatccgggccgggctgcccgacctgatcgccacccttcgg
gcggacccgaagctggcgagcgcccgcgtggtgctggagcccgggcgctacctcaccggg
ccggcgggcgtctacgtggcacgggtgctggcggtgaaggagtcacgcggcagccgcttc
gtcatcaccgatggcggcatgcaccatcatctcgccgccagcggcaatctcggccagatc
gtcaagcgcgactttccccttgcggcggtgaccgatctgggcggtgagcgcgcggcgacg
gcggtcgttggtccgctctgcacgccgctggacatgctggcccgcgccgcccccctgccg
ccgctggccgagggcgatctcgtcgcggtgctgcaatcgggggcctacgggctcaccgcg
agcccgaccggcttcctgagccacccgaccccggccgaagtgctggtggacgggggcgag
gccagggagatccgggcacgggggccttga
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