Methylorubrum extorquens DM4: METDI4858
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Entry
METDI4858 CDS
T00947
Symbol
xseA
Name
(GenBank) putative exonuclease VII, large subunit OB-fold nucleic acid binding domain
KO
K03601
exodeoxyribonuclease VII large subunit [EC:
3.1.11.6
]
Organism
mdi
Methylorubrum extorquens DM4
Pathway
mdi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mdi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
METDI4858 (xseA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mdi03400
]
METDI4858 (xseA)
Enzymes [BR:
mdi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.6 exodeoxyribonuclease VII
METDI4858 (xseA)
DNA repair and recombination proteins [BR:
mdi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
METDI4858 (xseA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_VII_L
tRNA_anti_2
tRNA_anti-codon
RecJ_OB
Gly_transporter
Motif
Other DBs
NCBI-ProteinID:
CAX26473
UniProt:
C7CI42
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All DBs
Position
4748169..4749737
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AA seq
522 aa
AA seq
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MPLVPPPRPATSAAAVPPPGEPAPSALLQANTPEWSVGDLAAALKRTLEDAFGHVRLRGE
ITGYRGPHGSGHAYFSLKDGSAKIDAVVWKGVLGRLRQKPKEGLEVVATGKITTFAGKSS
YQIVIDSMEPAGIGAWMALLEERKRQLAAEGLFETDRKRPIPFLPRVIGVVTSPTGAVIR
DILHRLEDRFPRPVLVWPVRVQGEGAAEEIAAAIRGFNALSPDGPIPRPDVLIVARGGGS
IEDLWAFNEEAVVRAAAESEIPLISAVGHETDTTLIDFASDRRAPTPTGAAEMAVPVRAE
LAAQVHELGARQAGTMLRRIERERADFRALVRAIPGADAFLAVKRQRLDLADARLRPALA
ANARDSRERLNRVADRLTRRSPAIALAEARARLAAIDHRPRTAMSRIVERRRDRLDALTS
LLGALSYKAVLARGYALVRDADGLPVRSAAAAAQAARFQLQFADGALFARPEEAPDDPVA
PPVADAPPSPRPKRAPRRAAPEPAPKPEKVTAEPAARQGSLF
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgccgctcgtgcccccgccacgtcctgcgacctctgccgccgccgtgccgccgccgggg
gagccggcgccctcggcgctgctccaggccaacacccccgaatggtcggtcggcgatctc
gccgccgccctgaagcgcaccctggaggacgctttcgggcatgtgcgcctgcgcggcgag
atcaccggctatcgcgggccgcacggctcgggccacgcctacttctcgctgaaagacggc
tcggcgaagatcgacgcggtggtgtggaagggtgtgctcgggcgcctgcgccagaagccc
aaggaagggcttgaggtcgtcgccaccggcaagatcacgacttttgccggaaaatcctcg
taccagatcgtcatcgactcgatggagcccgccggcatcggcgcctggatggcgctgctg
gaggagcgcaagcgccagctcgcggccgaggggctgttcgagactgaccggaagcggccg
atcccgttcctgccgcgggtgatcggcgtcgtcacctcgccgaccggcgcggtgatccgc
gacatcctccaccggctggaggaccgctttccccgccccgtgctggtctggccggtacgg
gtgcagggggagggggcggccgaggagatcgccgcggcgatccggggcttcaacgcgctg
tcgcccgatggcccgatcccgcggccggacgtgctgatcgtcgcccgcggcggcggctcg
atcgaagatctctgggccttcaacgaggaggcggtggtgcgcgccgccgccgagtccgag
atcccgctgatctcggcggtcggccacgagaccgatacgacgctgatcgacttcgcctcg
gaccgccgcgccccgacgcccacgggcgcggccgagatggcggtgccggtgcgggccgaa
ctcgccgcccaggtccacgagctcggcgcccggcaggccggcacgatgctgcggcggatc
gagcgcgagcgggcggatttccgggcgctggtgcgggcgatccccggcgccgacgccttc
ctcgccgtcaagcgccagcgcctcgacctcgccgacgcgcggctgcggccggcgctcgcc
gccaatgcccgcgattcccgcgagcgcctgaaccgcgtcgccgaccgcctcacccggcgc
tccccggcgatcgcgctggccgaggcgcgggctcggctcgccgccatcgaccaccgtccg
cgcacggccatgagccgcatcgtcgagcgccgccgcgaccggctcgacgcgctcaccagc
ctgctcggggcgctcagctacaaggccgtgctcgcccgcggctacgcgctcgtgcgcgac
gccgacggcctgccggtgcgctcggccgcggccgccgcccaagccgcgcggttccaactg
caatttgccgacggcgctctctttgcgcgcccggaggaggctccggacgaccccgttgcg
ccccccgttgccgacgccccgccctcgccgcgcccgaagcgcgcgccccgccgcgccgcg
cccgagcccgcaccgaagcctgagaaggtgacggccgaaccggccgcgcggcaaggatcg
ctgttctga
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