Methylorubrum extorquens DM4: METDI4989
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Entry
METDI4989 CDS
T00947
Name
(GenBank) putative 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
mdi
Methylorubrum extorquens DM4
Brite
KEGG Orthology (KO) [BR:
mdi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mdi03016
]
METDI4989
Enzymes [BR:
mdi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
METDI4989
Transfer RNA biogenesis [BR:
mdi03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
METDI4989
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
2H-SAK
Acb1
Insc_C
Motif
Other DBs
NCBI-ProteinID:
CAX26603
UniProt:
C7CJA0
LinkDB
All DBs
Position
4885956..4886522
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AA seq
188 aa
AA seq
DB search
MPRLFTGIEIPPDIAERLSFFRGGLPGARWIEPSDYHVTLRFLGEIDDMIAADVDAGLRE
ARVRAPLTVTLDGLASFGGDRPRALYASVVPTPELVELQEEHERIARRAGAAPERRKFTP
HVTLARLNREASPEAVARRLTEAGVFPRLTFTARRAALFSARTSRGGGPYLVEAAYPFAD
ADFELDDE
NT seq
567 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgcctgttcaccggcatcgagattccgccggacatcgccgagcggctatcgttc
ttccgcggcggcctgcccggcgcgcgctggatcgagccgagcgactaccacgtcaccctg
cgcttcctcggcgagatcgacgacatgatcgctgccgatgtcgatgccggcctgcgggag
gcgcgggtgcgcgcgccgctcaccgtgacgctggacgggctcgcgagcttcggcggcgac
cggccgcgggcgctctacgcctcggtcgtccccacgccggaactcgtcgaactgcaggaa
gagcacgagcgcatcgcccgccgggccggggccgcgccggagcggcgcaagttcacgccg
catgtgacgctggcccgcctcaaccgcgaggcctcgccggaggccgtggcgcgaaggctg
acggaggcgggggtgtttccccgcctgaccttcacggcacgccgcgccgccctgttctcc
gcccgcacctcgcgcggcggcgggccctacctcgtcgaggcggcctatcccttcgcggat
gcggatttcgagctggacgacgaatag
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