Methylorubrum extorquens DM4: METDI5049
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Entry
METDI5049 CDS
T00947
Symbol
uvrB
Name
(GenBank) UvrABC system protein B (UvrB protein) (Excinuclease ABC subunit B)
KO
K03702
excinuclease ABC subunit B
Organism
mdi
Methylorubrum extorquens DM4
Pathway
mdi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mdi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
METDI5049 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mdi03400
]
METDI5049 (uvrB)
DNA repair and recombination proteins [BR:
mdi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
METDI5049 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
METDI5049 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA_22
DUF87
DUF2963
SWI2_SNF2
Microtub_bd
Kinesin
UB2H
Motif
Other DBs
NCBI-ProteinID:
CAX26664
UniProt:
C7CJG1
LinkDB
All DBs
Position
complement(4961422..4964148)
Genome browser
AA seq
908 aa
AA seq
DB search
MSPAKAPAKATAKAPAKATSKTTAKADRPELMPLDEHLAALLNPALNRNRLKAVEPVPEP
PRKGRGQKGEAKAYKNIAQDGFAEAPQAGFAIGDAADVDPRLAQALGLVPPDDGPAPETA
PDAETPSLATEGVSATVEALERLLVEGNPLFKNGEAWVPHRPERPAKSEGGVKFTLKSEF
TPAGDQPTAIAALVEGVRTAERDQVLLGVTGSGKTFTMAKVIEETQRPALILAPNKTLAA
QLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHSATRALL
ERDDVIIVASVSCIYGIGSVETYTAMSFTVSLGERIEQRQLIADLVALQYKRIQSDFARG
TFRVRGDVIELWPAHLEDRGWRIGLFGDEIESIVEFDPLTGKKLNELKFVKVYANSHYVT
PRPTLQQAIKGIKTELKLRVEELTRMGRLIEAQRLEQRCTFDIEMIEATGACNGIENYSR
YLTGRKPGEPPPTLFEYLPDNALVFTDESHVTVPQIGGMYKSDFRRKATLAEYGFRLPSC
LDNRPLRFEEWDAMRPQSVHVSATPAKWEMERTAGVFAEQVIRPTGLVDPVIEIRPARSQ
VDDLLGEVREVAQAGYRTLVTTLTKRMAEDLTEYLHENSVRVRYMHSDIDTLERIEIIRD
LRLGAFDVLIGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNADARCI
LYADNITGSMERAMAETERRRQKQLAYNEEHGITPQSVKRGISDILESVYERDHVRVDTG
LAKDAITVGHNLKAVMADLEKRMRAAAADLDFEEAARLRDELKRLQATELMVSDDPMARQ
GDIEREAGRYGQKGSRISKPTLDNMGPGTDRELPADAVPWQERPKARSTQGLGGQKPRYK
GGGGRKRG
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
gtgagtccggccaaagcgcctgccaaagcaacggccaaagcgcccgccaaggcgacctcg
aagacgacggcgaaggccgaccggcccgagctgatgccgctcgacgagcatcttgccgcg
ctgctcaacccggccctcaaccgcaaccgcttgaaggcggtcgagcccgtgccggaaccg
ccccggaagggacgcgggcaaaagggtgaagcgaaagcctacaagaatatcgcgcaggac
ggcttcgccgaggcgcctcaggcgggcttcgccatcggcgacgcggccgacgtcgatccg
cggctggcccaggcgctcggcctcgtcccgcccgacgacggcccagcaccggaaaccgcg
cccgatgccgagacgccctcgctcgccacagagggcgtctcggccacggtcgaggcgctg
gagcggctgctcgtcgagggcaacccgctgttcaagaacggcgaggcctgggtgccgcac
aggcccgagcgcccggccaagtcggagggcggcgtgaagttcacgctgaaatccgagttc
acgcccgccggtgaccagcccaccgccatcgccgccctggtcgagggtgtccggacggcc
gagcgcgatcaggtgctgctcggcgtcaccggctcgggaaaaaccttcacgatggccaag
gtcatcgaggagacgcagcgcccggccctgatcctggcgcccaacaagacgctggcggcg
cagctctacggcgagttcaagagctttttcccggacaatgcggtcgagtacttcgtctcg
tattacgactattaccaacccgaggcctacgtgccccggtccgacaccttcatcgagaag
gaaagctcgatcaacgagcagatcgaccggatgcgccactcggccacccgcgccctgttg
gagcgggacgacgtcatcatcgtcgcctcggtctcgtgcatctacggtatcggctcggtc
gagacctacacggcgatgtcgttcaccgtgtcgctcggcgagcggatcgagcagcgccag
ctcatcgccgacctcgtggcgctccagtacaagcgcatccagtcggacttcgcccgcggc
accttccgggtgcgcggcgatgtgatcgagctgtggccggcccacttggaggatcgcggc
tggcgcatcggcctgttcggcgacgagatcgaatccatcgtcgagttcgatccgctgacg
ggtaagaagctcaacgagctgaagttcgtcaaagtctacgcgaactcgcactacgtcacg
ccgcgccccaccctccagcaggcgatcaagggcatcaagaccgagctgaagctccgcgtc
gaggagttgacccggatgggccgcctcatcgaggcacagcggctggagcagcgctgcacc
ttcgacatcgagatgatcgaggcgacgggtgcctgcaacggcatcgagaactattcgcgc
tacctcaccggccgcaaacccggtgagccgccgccgaccctgttcgagtacctgcccgac
aacgccctcgtcttcaccgacgagagccacgtcacggttccgcagatcggcggcatgtac
aagagcgacttccgccgcaaggcgacgctggccgagtacggcttccgcctgccctcctgc
ctcgacaaccgcccgctgcggttcgaggaatgggacgcgatgcgcccgcaatcggtccac
gtctcggcgaccccggccaagtgggagatggagcgcacggccggcgtcttcgccgagcag
gtcatccgccccaccggcctcgtcgatccggtgatcgagatccgcccggcccgctcccag
gtcgacgacctgctgggcgaagtccgcgaagtcgcccaggccggctaccgcaccctggtg
accacgctgaccaagcgcatggccgaggacctgaccgagtatctgcacgagaactcggtg
cgggtgcgctacatgcactccgacatcgacaccctggagcgcatcgagattattcgcgac
ctgcgcctcggcgccttcgacgtgctgatcggcatcaacctcctgcgcgaaggtctcgac
atccccgaatgcgcgctggtcgccattctcgacgccgacaaggaaggctttctgcgctcc
gagacctcgctgatccagaccatcggccgcgcggcccgcaacgcggatgcccgctgcatc
ctctacgcggacaacatcaccggctcgatggagcgggcgatggccgagaccgagcggcgc
cgccagaagcagctcgcctacaacgaggaacacggcatcacgccgcaatcggtcaagcgc
ggcatcagcgacatcctcgagagcgtgtacgagcgcgaccacgttcgcgtcgatacgggg
ctggccaaggacgcgatcaccgtcggccacaacctcaaggcggtgatggccgacctcgaa
aagcgcatgcgcgctgccgccgccgatctcgacttcgaggaggcggcgcggcttcgcgac
gagctcaagcgcctccaggcgaccgaactcatggtctccgacgatcccatggcccggcag
ggcgacatcgagcgcgaggccggccgctacgggcagaagggcagccgcatctcgaagccc
accctcgacaatatgggccccggcaccgaccgcgaactcccggccgacgccgtgccctgg
caggagcggcccaaggcgcgctcgacgcaaggactcggcggtcagaagccccgctacaag
ggcggcggcgggcgcaagcgggggtga
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