Methylorubrum extorquens DM4: METDI5250
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Entry
METDI5250 CDS
T00947
Name
(GenBank) putative phage DNA polymerase
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
mdi
Methylorubrum extorquens DM4
Pathway
mdi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mdi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
METDI5250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mdi03400
]
METDI5250
Enzymes [BR:
mdi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
METDI5250
DNA repair and recombination proteins [BR:
mdi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
METDI5250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
CAX26863
UniProt:
C7CLL4
LinkDB
All DBs
Position
complement(5174341..5175375)
Genome browser
AA seq
344 aa
AA seq
DB search
METMTANHADTDARGDLISYLDFHVAAGVDAVLDEQPHDRFAEAESVRADAASQAEPATR
REPLEPRREPLEPRREPLEPRREPLPPRREPLEPRSEPPQRDAPSAEGPPLEFRRELPSR
DAPAREPPRTYGNAAGAKPGEAADDARARAAQMKTLEELEELLRGFEGCGLRFTAKNLVF
ADGNPQARVMFVGEAPGADEDRIGKPFMGRSGQLLDRMMAAIGLDRTSAYISNVVPWRPP
GNRNPTPQEISICRPFVERQIELANPDILVCLGAPATQTLTGTKDGILKARGRFYPYRLG
DGREIRALATLHPAYLLRQPVQKRLAWRDFRMLKSALDGSAAGK
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atggaaacgatgacggcaaaccacgcggataccgacgccagaggcgacctgatctcctac
ctcgacttccacgtcgcggcaggcgtcgacgcggtcctcgacgagcagccccacgaccgc
ttcgccgaggccgagtccgttcgggctgacgccgcctcgcaggccgagccggccacgcgc
cgcgagccccttgaaccacgccgcgagccccttgaaccacgccgcgagccccttgaacca
cgccgtgagcccctcccaccacgccgcgagccactcgaaccgcgcagcgagccgccgcag
cgtgacgctccgtcggcggaagggccgccactggaattccggcgtgagctgccgagccgc
gacgcgcccgcgcgcgagcccccccgcacctatggcaacgcggccggcgccaagcccggc
gaggcggcggacgatgcgcgggcacgggccgcgcagatgaagacccttgaggagctggaa
gagctgctgcgcggcttcgagggctgcggcctgcgcttcaccgccaagaacctcgtcttc
gccgatggcaatccgcaggcgcgggtgatgttcgtcggcgaggcgccgggggccgacgag
gaccggatcggcaagccgttcatgggacgctccggccagcttctcgaccggatgatggcg
gcgatcggcctcgaccggacgagcgcctacatctccaacgtggtgccctggcgcccgccg
ggcaaccgcaacccgaccccgcaggagatctcgatctgccgccccttcgtcgagcgccag
atcgaactcgccaaccccgacatcctcgtctgtctcggcgcgcccgcgacgcagacgctg
accggcaccaaggacggcatcctcaaggcgcgcggacgcttctacccgtatcgccttggc
gacggccgcgagatccgggcgctcgccaccctccatccggcctacctgctgcgccagccg
gtgcagaagcgcctcgcttggcgcgacttccggatgctgaagagtgccctcgacgggagc
gccgcgggcaagtag
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